RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 LOC102724428A0A0B4J2F2 783 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 FAM177BA6PVY3 158 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 J3QW42 95 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 TERTO14746 1132 aaKnown RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 SMNDC1O75940 238 aaKnown RBP eCLIP6.75□□□□□ -1.33
USP47-204ENST00000525078 MAP3K6O95382 1288 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 MT-CO1P00395 513 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 HOXD8P13378 290 aaPredicted RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 SERPINB3P29508 390 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 CYP2C19P33261 490 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 SIK1P57059 783 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 IL2P60568 153 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 GABREP78334 506 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 INSM1Q01101 510 aaPredicted RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 CHAF1AQ13111 956 aaPredicted RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 SLC4A8Q2Y0W8 1093 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 CEP135Q66GS9 1140 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 HEATR6Q6AI08 1181 aaKnown RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 HFE2Q6ZVN8 426 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 HDXQ7Z353 690 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 PNMA8AQ86V59 439 aaPredicted RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 IFNL2Q8IZJ0 200 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.75□□□□□ -1.33
USP47-204ENST00000525078 FUBP3Q96I24 572 aaKnown RBP eCLIP6.75□□□□□ -1.33
USP47-204ENST00000525078 DHRS1Q96LJ7 313 aa6.75□□□□□ -1.33
USP47-204ENST00000525078 MAGEB10Q96LZ2 347 aaPredicted RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 CDC5LQ99459 802 aaKnown RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 POP1Q99575 1024 aaKnown RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 SAP30BPQ9UHR5 308 aaKnown RBP6.75□□□□□ -1.33
USP47-204ENST00000525078 CFAP69A5D8W1 941 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 J3QL48 77 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 GFRA2O00451 464 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 ERC2O15083 957 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 ATXN7O15265 892 aaPredicted RBP6.74□□□□□ -1.33
USP47-204ENST00000525078 PRKD3O94806 890 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 APBA3O96018 575 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 BPIP17213 487 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 NRLP54845 237 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 MLLT1Q03111 559 aaPredicted RBP6.74□□□□□ -1.33
USP47-204ENST00000525078 STK3Q13188 491 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 GRM3Q14832 879 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 PIK3R6Q5UE93 754 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 CDCA2Q69YH5 1023 aaPredicted RBP6.74□□□□□ -1.33
USP47-204ENST00000525078 ZNF227Q86WZ6 799 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 RNF217Q8TC41 542 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 OSBP2Q969R2 916 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 ELMO3Q96BJ8 720 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 PLPPR2Q96GM1 343 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 WNK4Q96J92 1243 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 MENTQ9BUN1 341 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 ZC3H12CQ9C0D7 883 aaKnown RBP6.74□□□□□ -1.33
USP47-204ENST00000525078 NRBP1Q9UHY1 535 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 GIT1Q9Y2X7 761 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 SNCAIPQ9Y6H5 919 aa6.74□□□□□ -1.33
USP47-204ENST00000525078 DCDC2BA2VCK2 349 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 B4E1Z4 1266 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 M0R2C6 588 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 DNAJA2O60884 412 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 NBNO60934 754 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 EPHX1P07099 455 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 LDHCP07864 332 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 GSTP1P09211 210 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 POLR2BP30876 1174 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 IARSP41252 1262 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 GRIA2P42262 883 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 RECQLP46063 649 aaPredicted RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 SPEM2Q0P670 501 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 AP3B2Q13367 1082 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 GTF2H3Q13889 308 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 GBX1Q14549 363 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 TDRD10Q5VZ19 366 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 FIGNL1Q6PIW4 674 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 TOGARAM2Q6ZUX3 1019 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 RAB44Q7Z6P3 723 aaPredicted RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 ADAT2Q7Z6V5 191 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 PDZD3Q86UT5 571 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 FCHSD1Q86WN1 690 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 LINC00528Q8N1L1 170 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 PARD3BQ8TEW8 1205 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 TRIM47Q96LD4 638 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 GAS2L1Q99501 681 aaPredicted RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 LGR4Q9BXB1 951 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 EFCC1Q9HA90 598 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 NGRNQ9NPE2 291 aaKnown RBP6.73□□□□□ -1.33
USP47-204ENST00000525078 STRN4Q9NRL3 753 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 LRRC4BQ9NT99 713 aa6.73□□□□□ -1.33
USP47-204ENST00000525078 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.72□□□□□ -1.33
USP47-204ENST00000525078 NOP56O00567 594 aaKnown RBP6.72□□□□□ -1.33
USP47-204ENST00000525078 PMM2O15305 246 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 F11P03951 625 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 C6orf222P0C671 652 aaPredicted RBP6.72□□□□□ -1.33
USP47-204ENST00000525078 FAM157BP0CG42 384 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 BMP2P12643 396 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 PMS1P54277 932 aaKnown RBP6.72□□□□□ -1.33
USP47-204ENST00000525078 ADCY1Q08828 1119 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 BIRC3Q13489 604 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 INPP5AQ14642 412 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 SKOR2Q2VWA4 1001 aaPredicted RBP6.72□□□□□ -1.33
USP47-204ENST00000525078 CCDC174Q6PII3 467 aa6.72□□□□□ -1.33
USP47-204ENST00000525078 LRFN4Q6PJG9 635 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 989.5 ms