RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HSPA12BQ96MM6 686 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ASB16Q96NS5 453 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CRBNQ96SW2 442 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 DSCC1Q9BVC3 393 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOC4LQ9BVI4 516 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RBCK1Q9BYM8 510 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 BCO2Q9BYV7 579 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 BACH2Q9BYV9 841 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 GPR62Q9BZJ7 368 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 BRINP2Q9C0B6 783 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H12CQ9C0D7 883 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 WNT10AQ9GZT5 417 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 SAP130Q9H0E3 1048 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RNF38Q9H0F5 515 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 AP5M1Q9H0R1 490 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC86Q9H6F5 360 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 MSL2Q9HCI7 577 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NPHS2Q9NP85 383 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 JADE2Q9NQC1 790 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 DISC1Q9NRI5 854 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 METTL5Q9NRN9 209 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 C1GALT1Q9NS00 363 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 MBNL3Q9NUK0 354 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 AURKAIP1Q9NWT8 199 aaPredicted RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RTEL1Q9NZ71 1219 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRR13Q9NZ81 148 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 NTMQ9P121 344 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CNTN3Q9P232 1028 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 CEP131Q9UPN4 1083 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 SF3B6Q9Y3B4 125 aaKnown RBP0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 TCAF1Q9Y4C2 921 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 RIPOR2Q9Y4F9 1068 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCDHB5Q9Y5E4 795 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF536O15090 1300 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 SBNO2Q9Y2G9 1366 aa0.8□□□□□ -2.28
RNU4-54P-201ENST00000516428 hCG_2014768A0A024R1R8 64 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PNMA6FA0A0J9YX94 578 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 DCDC2CA8MYV0 355 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 AGRPO00253 132 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYR61O00622 381 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TPD52L2O43399 206 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MYO1BO43795 1136 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GRIN3BO60391 1043 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RAB11FIP3O75154 756 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CILPO75339 1184 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRPF40AO75400 957 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 LGR5O75473 907 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CLEC3AO75596 197 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 EIF3JO75822 258 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RHOBTB3O94955 611 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RECKO95980 971 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CYBBP04839 570 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GSNP06396 782 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 HSD3B2P26439 372 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GNA15P30679 374 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADMP35318 185 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 KCNJ4P48050 445 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GRIA4P48058 902 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SERPINB4P48594 390 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ST13P50502 369 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF157P51786 506 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 GTF2A2P52657 109 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 HMGA2P52926 109 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RTP1P59025 263 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ANAPC15P60006 121 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MXRA7P84157 204 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 HDLBPQ00341 1268 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SETQ01105 290 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RPL6Q02878 288 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM69CQ0P6D2 419 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MESP2Q0VG99 397 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PSMD2Q13200 908 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 COL9A2Q14055 689 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 MRPL58Q14197 206 aaKnown RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RAB3GAP1Q15042 981 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 NFE2L2Q16236 605 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ECM1Q16610 540 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PTPROQ16827 1216 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF423Q2M1K9 1284 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SPRED3Q2MJR0 410 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ERCC6LQ2NKX8 1250 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 NBPF9Q3BBW0 867 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC144BQ3MJ40 725 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 LARP7Q4G0J3 582 aaKnown RBP eCLIP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 HSP90AB2PQ58FF8 381 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPM1JQ5JR12 505 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 WIPI1Q5MNZ9 446 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 RNF187Q5TA31 235 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PEAR1Q5VY43 1037 aaPredicted RBP0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCNX4Q63HM2 1172 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 IQCEQ6IPM2 695 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SDE2Q6IQ49 451 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PAQR3Q6TCH7 311 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 SEZ6L2Q6UXD5 910 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TPTE2Q6XPS3 522 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRR23BQ6ZRT6 265 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF662Q6ZS27 426 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 CEP128Q6ZU80 1094 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMC7Q7Z402 723 aa0.79□□□□□ -2.28
RNU4-54P-201ENST00000516428 WAPLQ7Z5K2 1190 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms