RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 TMTC2Q8N394 836 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 TMEM87BQ96K49 555 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 C12orf42Q96LP6 360 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 CFHR5Q9BXR6 569 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 NBPF3Q9H094 633 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 ZFYVE28Q9HCC9 887 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 INCENPQ9NQS7 918 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 PNMA2Q9UL42 364 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 STX8Q9UNK0 236 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 AGTPBP1Q9UPW5 1226 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 CASP8AP2Q9UKL3 1982 aa9.1□□□□□ -0.95
LIMCH1-222ENST00000515847 A0A1W2PRG0 241 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 SLC27A2O14975 620 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 WDR46O15213 610 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 CYP21A2P08686 494 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 TOP1P11387 765 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 HOXB3P14651 431 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 HSPA4P34932 840 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 PTH1RQ03431 593 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 FAM47AQ5JRC9 791 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 SYNE3Q6ZMZ3 975 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 DGKHQ86XP1 1220 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 GMCL1P1Q8NEA9 526 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 SMCR8Q8TEV9 937 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 VCPKMTQ9H867 229 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 KAT14Q9H8E8 782 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 EMILIN3Q9NT22 766 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 MTMR4Q9NYA4 1195 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 TMX2Q9Y320 296 aa9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 CTDP1Q9Y5B0 961 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-222ENST00000515847 TNKSO95271 1327 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 NEDD4P46934 1319 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 MYPNQ86TC9 1320 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 ADGRA2Q96PE1 1338 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 MYH4Q9Y623 1939 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 IGKV6D-41A0A0C4DH26 115 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 B4E1Z4 1266 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L15C9J2P7 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L13C9JLJ4 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L11C9JVI0 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L18D6R9N7 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L22D6RA61 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L17D6RBQ6 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L19D6RCP7 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L20D6RJB6 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 E7EWF7 191 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 RAD21O60216 631 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 KDM4AO75164 1064 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CALM1P0DP23 149 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CALM2P0DP24 149 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CALM3P0DP25 149 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 FDX1P10109 184 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CYP2C8P10632 490 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 EEF2P13639 858 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 COPB2P35606 906 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 GCLCP48506 637 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 USP17L24Q0WX57 530 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 WTAPQ15007 396 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 NECTIN1Q15223 517 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 TSGA10IPQ3SY00 556 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 IFIT1BQ5T764 474 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 BLOC1S2Q6QNY1 142 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 SIAH1Q8IUQ4 282 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 MB21D1Q8N884 522 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 DCAF4Q8WV16 495 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CHMP4CQ96CF2 233 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 CEP95Q96GE4 821 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 NEK1Q96PY6 1258 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 ZSCAN10Q96SZ4 725 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 PRDM10Q9NQV6 1147 aa9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 ISY1Q9ULR0 285 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-222ENST00000515847 GPR25O00155 361 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 IFIT3O14879 490 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 TLR2O60603 784 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 VCAM1P19320 739 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 TRAF1Q13077 416 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 IKQ13123 557 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 KIF22Q14807 665 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 ANKRD1Q15327 319 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 NOM1Q5C9Z4 860 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 KIAA1755Q5JYT7 1200 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 GPATCH4Q5T3I0 446 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 CATIPQ7Z7H3 387 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 FAM160B2Q86V87 743 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 NKX2-3Q8TAU0 364 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 ZNF296Q8WUU4 475 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 MKL1Q969V6 931 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 GMCL1Q96IK5 515 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 TANGO6Q9C0B7 1094 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 CLIP2Q9UDT6 1046 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 ZSWIM8A7E2V4 1837 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 HTTP42858 3142 aa9.07□□□□□ -0.96
LIMCH1-222ENST00000515847 FAM205CA6NFA0 338 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 CCDC69A6NI79 296 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 NMT2O60551 498 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 FKTNO75072 461 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 DDAH1O94760 285 aa9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 HOXA7P31268 230 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-222ENST00000515847 KIF5BP33176 963 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms