RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 TTLL11Q8NHH1 800 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 GCC1Q96CN9 775 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 METTL5Q9NRN9 209 aaKnown RBP11.1□□□□□ -0.63
USP53-207ENST00000510852 COL24A1Q17RW2 1714 aa11.1□□□□□ -0.63
USP53-207ENST00000510852 GOLGA6L3A6NEY3 463 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 ABL1P00519 1130 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 HOXD10P28358 340 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 SARSP49591 514 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 RACK1P63244 317 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 SLMAPQ14BN4 828 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 CCDC24Q8N4L8 307 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 ARL10Q8N8L6 244 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 CNBD1Q8NA66 436 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 KLHL23Q8NBE8 558 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 N4BP2L2Q92802 583 aaPredicted RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 SRPK1Q96SB4 655 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 TSPY26PQ9H489 355 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 PGAP2Q9UHJ9 254 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 ABCC12Q96J65 1359 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 FAM221BA6H8Z2 402 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 RFX5P48382 616 aaPredicted RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 DALRD3Q5D0E6 543 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 CPLX2Q6PUV4 134 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 GIMAP8Q8ND71 665 aaPredicted RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 TEKT1Q969V4 418 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 PHOX2BQ99453 314 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 FAM167BQ9BTA0 163 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 PA2G4Q9UQ80 394 aaKnown RBP11.09□□□□□ -0.63
USP53-207ENST00000510852 EXOC6BQ9Y2D4 811 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 QSER1Q2KHR3 1735 aa11.09□□□□□ -0.63
USP53-207ENST00000510852 SURF6O75683 361 aaKnown RBP11.08□□□□□ -0.64
USP53-207ENST00000510852 MMP10P09238 476 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 PYGBP11216 843 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 MORC3Q14149 939 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP53-207ENST00000510852 PRR5LQ6MZQ0 368 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 KLHDC4Q8TBB5 520 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 TRMT2BQ96GJ1 504 aaKnown RBP11.08□□□□□ -0.64
USP53-207ENST00000510852 GREM2Q9H772 168 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 PRMT3O60678 531 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 IDEP14735 1019 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 PTPN12Q05209 780 aaKnown RBP11.08□□□□□ -0.64
USP53-207ENST00000510852 CDCA2Q69YH5 1023 aaPredicted RBP11.08□□□□□ -0.64
USP53-207ENST00000510852 C3orf67Q6ZVT6 689 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 GPCPD1Q9NPB8 672 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 IPPQ9Y573 584 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 N6AMT1Q9Y5N5 214 aa11.08□□□□□ -0.64
USP53-207ENST00000510852 WASHC4Q2M389 1173 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 CCDC57Q2TAC2 916 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 LVRNQ6Q4G3 990 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 DAAM2Q86T65 1068 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 SH3TC2Q8TF17 1288 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 OSBPL5Q9H0X9 879 aaPredicted RBP11.07□□□□□ -0.64
USP53-207ENST00000510852 COPRSQ9NQ92 184 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 PARP3Q9Y6F1 533 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 CAPN2P17655 700 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 ITGA6P23229 1130 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 COPAP53621 1224 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 ST5P78524 1137 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 IFIT5Q13325 482 aaKnown RBP11.07□□□□□ -0.64
USP53-207ENST00000510852 BIRC3Q13489 604 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 R3HDM1Q15032 1099 aaKnown RBP11.07□□□□□ -0.64
USP53-207ENST00000510852 ECM1Q16610 540 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 CCDC152Q4G0S7 254 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 SLC16A10Q8TF71 515 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 NLRP3Q96P20 1036 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 VPS33BQ9H267 617 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 SNX5Q9Y5X3 404 aa11.07□□□□□ -0.64
USP53-207ENST00000510852 POU3F3P20264 500 aaPredicted RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 KIF5BP33176 963 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 CLCN1P35523 988 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 EPHB1P54762 984 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 MCL1Q07820 350 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 SF3B3Q15393 1217 aaKnown RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 MAATS1Q7Z4T9 603 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 BHMTQ93088 406 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 HVCN1Q96D96 273 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 ZNF594Q96JF6 807 aaPredicted RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP53-207ENST00000510852 SIL1Q9H173 461 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 ATP8A1Q9Y2Q0 1164 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 MAGED1Q9Y5V3 778 aaPredicted RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 ANKRD18BA2A2Z9 1011 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 KIF3CO14782 793 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 NBNO60934 754 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 OATP04181 439 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 ATP2B4P23634 1241 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 CHMP4BP1P59074 171 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 PUM3Q15397 648 aaKnown RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 IL31Q6EBC2 164 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 KIAA0907Q7Z7F0 614 aaPredicted RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 TAX1BP1Q86VP1 789 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 WDR66Q8TBY9 1149 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 SYAP1Q96A49 352 aaPredicted RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 DIAPH3Q9NSV4 1193 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 DCTN4Q9UJW0 460 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 TPCN1Q9ULQ1 816 aa11.06□□□□□ -0.64
USP53-207ENST00000510852 DDX60Q8IY21 1712 aaKnown RBP11.06□□□□□ -0.64
USP53-207ENST00000510852 SOCS7O14512 581 aa11.05□□□□□ -0.64
USP53-207ENST00000510852 SLC27A2O14975 620 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms