RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 ROBO3Q96MS0 1386 aa13.83□□□□□ -0.19
HMGCS1-204ENST00000507293 GSG1L2A8MUP6 293 aa13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 RNF113AO15541 343 aaKnown RBP13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 RASA1P20936 1047 aa13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 SBK1Q52WX2 424 aa13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 FAM83BQ5T0W9 1011 aa13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 ABRAQ8N0Z2 381 aa13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 SENP6Q9GZR1 1112 aaPredicted RBP13.83□□□□□ -0.2
HMGCS1-204ENST00000507293 MINDY4BA8MYZ0 360 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 DNM1LO00429 736 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 GPAA1O43292 621 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 SLC25A27O95847 323 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 FCER1AP12319 257 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 ANO1Q5XXA6 986 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 UBE2OQ9C0C9 1292 aaKnown RBP13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 EPB41L4AQ9HCS5 686 aaPredicted RBP13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 SLC5A4Q9NY91 659 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 PPP1R9AQ9ULJ8 1098 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 ADAMTS5Q9UNA0 930 aa13.82□□□□□ -0.2
HMGCS1-204ENST00000507293 SMCHD1A6NHR9 2005 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 M0R2C6 588 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 TDO2P48775 406 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 ATN1P54259 1190 aaPredicted RBP13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 GJC2Q5T442 439 aaPredicted RBP13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 GIMAP6Q6P9H5 292 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 RIOX2Q8IUF8 465 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 TDHQ8IZJ6 230 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 MAML3Q96JK9 1138 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 MMP19Q99542 508 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 NUP88Q99567 741 aaPredicted RBP13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 MKNK2Q9HBH9 465 aa13.81□□□□□ -0.2
HMGCS1-204ENST00000507293 VWA5AO00534 786 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 SEPT4O43236 478 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 MDM2Q00987 491 aaPredicted RBP13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 PRAMEF19Q5SWL8 479 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 REPS2Q8NFH8 660 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 NYAP2Q9P242 653 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 ZNF214Q9UL59 606 aaPredicted RBP13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 PCDHB15Q9Y5E8 787 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
HMGCS1-204ENST00000507293 KBTBD13C9JR72 458 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 NDUFB10O96000 172 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 MYCNP04198 464 aaPredicted RBP13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 APPP05067 770 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 PGK2P07205 417 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 GNAT2P19087 354 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 STAT3P40763 770 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 RTP1P59025 263 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 ARRDC4Q8NCT1 418 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 OTUD7AQ8TE49 926 aaPredicted RBP13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 RANBP2P49792 3224 aaKnown RBP13.79□□□□□ -0.2
HMGCS1-204ENST00000507293 MCM3APO60318 1980 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 IGKV6D-41A0A0C4DH26 115 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 F5H6K3 240 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 ERC2O15083 957 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 PRDM1O75626 825 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 COPB2P35606 906 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 KLRC3Q07444 240 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 KCTD2Q14681 263 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 LRRFIP1Q32MZ4 808 aaKnown RBP13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 LRIT3Q3SXY7 679 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 FAM47AQ5JRC9 791 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 PI4K2BQ8TCG2 481 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 SEC62Q99442 399 aaKnown RBP13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 FSD1Q9BTV5 496 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 CLIP2Q9UDT6 1046 aa13.78□□□□□ -0.2
HMGCS1-204ENST00000507293 PATL2C9JE40 543 aaKnown RBP13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 LRRC41Q15345 812 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 ZNF792Q3KQV3 632 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 SNRNP48Q6IEG0 339 aaKnown RBP13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 IFNL3Q8IZI9 196 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 ZNF444Q8N0Y2 327 aaPredicted RBP13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 CEP95Q96GE4 821 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 PLIN4Q96Q06 1357 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 LBHD1Q9BQE6 289 aaPredicted RBP13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 ZNF287Q9HBT7 754 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 ATP11BQ9Y2G3 1177 aa13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 DIS3Q9Y2L1 958 aaKnown RBP13.77□□□□□ -0.21
HMGCS1-204ENST00000507293 MX1P20591 662 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 ADCYAP1R1P41586 468 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 TRIM60Q495X7 471 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 SLC39A5Q6ZMH5 540 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 LRRC47Q8N1G4 583 aaKnown RBP13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 TINF2Q9BSI4 451 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 TEX13BQ9BXU2 312 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 NACAP1Q9BZK3 213 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 MTMR4Q9NYA4 1195 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 PRKAG2Q9UGJ0 569 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 NRBP1Q9UHY1 535 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 RIPK3Q9Y572 518 aa13.76□□□□□ -0.21
HMGCS1-204ENST00000507293 RARBP10826 455 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 TAL1P17542 331 aaPredicted RBP13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 SLC4A3P48751 1232 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 RRP1P56182 461 aaKnown RBP13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 ZMYM1Q5SVZ6 1142 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 GPR153Q6NV75 609 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 Q7L0L9 218 aa13.75□□□□□ -0.21
HMGCS1-204ENST00000507293 CPXCR1Q8N123 301 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms