RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ROBO3Q96MS0 1386 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 EVI5O60447 810 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 ERCC3P19447 782 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 ZMYM1Q5SVZ6 1142 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 NCAPG2Q86XI2 1143 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 DIS3LQ8TF46 1054 aaKnown RBP21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 NAPBQ9H115 298 aa21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 COLQQ9Y215 455 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-209ENST00000504627 STRNO43815 780 aa21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 PRDM1O75626 825 aa21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 SLC3A2P08195 630 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 CCND3P30281 292 aaPredicted RBP21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 SHCBP1Q8NEM2 672 aa21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 NBPF3Q9H094 633 aa21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 OGDHLQ9ULD0 1010 aa21.4■■□□□ 1.02
SQSTM1-209ENST00000504627 HOXC6P09630 235 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 ADORA2AP29274 412 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 PDE4BQ07343 736 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 FAM83BQ5T0W9 1011 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 EVI5LQ96CN4 794 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 MROH8Q9H579 483 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 SLC5A4Q9NY91 659 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 FLRT1Q9NZU1 646 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 NYAP2Q9P242 653 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 CLIP2Q9UDT6 1046 aa21.39■■□□□ 1.01
SQSTM1-209ENST00000504627 GSPT1P15170 499 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-209ENST00000504627 CHRDL2Q6WN34 429 aa21.38■■□□□ 1.01
SQSTM1-209ENST00000504627 NPLOC4Q8TAT6 608 aa21.38■■□□□ 1.01
SQSTM1-209ENST00000504627 C11orf49Q9H6J7 331 aa21.38■■□□□ 1.01
SQSTM1-209ENST00000504627 FBXO28Q9NVF7 368 aa21.38■■□□□ 1.01
SQSTM1-209ENST00000504627 SLC25A27O95847 323 aa21.37■■□□□ 1.01
SQSTM1-209ENST00000504627 CNGA1P29973 690 aa21.37■■□□□ 1.01
SQSTM1-209ENST00000504627 TMEM132BQ14DG7 1078 aa21.37■■□□□ 1.01
SQSTM1-209ENST00000504627 PPP1R9AQ9ULJ8 1098 aa21.37■■□□□ 1.01
SQSTM1-209ENST00000504627 F5H6K3 240 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 TSPY3P0CV98 308 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 TSPY8P0CW00 308 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 CYP2C19P33261 490 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 KLRC3Q07444 240 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 PPARAQ07869 468 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 CCDC129Q6ZRS4 1044 aa21.36■■□□□ 1.01
SQSTM1-209ENST00000504627 VWA5AO00534 786 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 FCER1AP12319 257 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 LHX8Q68G74 356 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 ABRAQ8N0Z2 381 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 NUP88Q99567 741 aaPredicted RBP21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 ADAMTS5Q9UNA0 930 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 RLFQ13129 1914 aa21.35■■□□□ 1.01
SQSTM1-209ENST00000504627 IGKV6D-41A0A0C4DH26 115 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 TTLL1O95922 423 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 NDUFB10O96000 172 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 STAT3P40763 770 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 CEP95Q96GE4 821 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 SLF1Q9BQI6 1058 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 MTMR4Q9NYA4 1195 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 CTDP1Q9Y5B0 961 aaPredicted RBP21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 A0A0G2JMZ2 1700 aa21.34■■□□□ 1.01
SQSTM1-209ENST00000504627 TRIM6-TRIM34B2RNG4 842 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 MSCO60682 206 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 COBLO75128 1261 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 MNX1P50219 401 aaPredicted RBP21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 TFAP4Q01664 338 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 FAM47AQ5JRC9 791 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 OLFML2BQ68BL8 750 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 RIOX2Q8IUF8 465 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 C7orf61Q8IZ16 206 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 NEDD1Q8NHV4 660 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 MMP19Q99542 508 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 HELLSQ9NRZ9 838 aa21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 DDX20Q9UHI6 824 aaKnown RBP21.33■■□□□ 1.01
SQSTM1-209ENST00000504627 GREB1LQ9C091 1923 aaPredicted RBP21.32■■□□□ 1
SQSTM1-209ENST00000504627 COPB2P35606 906 aa21.32■■□□□ 1
SQSTM1-209ENST00000504627 KCTD2Q14681 263 aa21.32■■□□□ 1
SQSTM1-209ENST00000504627 C8orf34Q49A92 452 aa21.32■■□□□ 1
SQSTM1-209ENST00000504627 PRPF38AQ8NAV1 312 aaKnown RBP21.32■■□□□ 1
SQSTM1-209ENST00000504627 MKL1Q969V6 931 aa21.32■■□□□ 1
SQSTM1-209ENST00000504627 RILPL2Q969X0 211 aa21.32■■□□□ 1
SQSTM1-209ENST00000504627 ISY1Q9ULR0 285 aaKnown RBP21.32■■□□□ 1
SQSTM1-209ENST00000504627 CTDSPL2Q05D32 466 aa21.31■■□□□ 1
SQSTM1-209ENST00000504627 LRRC47Q8N1G4 583 aaKnown RBP21.31■■□□□ 1
SQSTM1-209ENST00000504627 RBM27Q9P2N5 1060 aaKnown RBP21.31■■□□□ 1
SQSTM1-209ENST00000504627 ZNF214Q9UL59 606 aaPredicted RBP21.31■■□□□ 1
SQSTM1-209ENST00000504627 SYNPO2Q9UMS6 1093 aa21.31■■□□□ 1
SQSTM1-209ENST00000504627 TSPY2A6NKD2 308 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 ZBED4O75132 1171 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 CYBAP13498 195 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 SDSP20132 328 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 SLC4A3P48751 1232 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 MCMDC2Q4G0Z9 681 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 PPP4R3BQ5MIZ7 849 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 VPS53Q5VIR6 699 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 KIFC2Q96AC6 838 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 MAML3Q96JK9 1138 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 TEX13BQ9BXU2 312 aa21.3■■□□□ 1
SQSTM1-209ENST00000504627 ZNF236Q9UL36 1845 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 PLIN4Q96Q06 1357 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 CDC45O75419 566 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 PGK2P07205 417 aa21.29■■□□□ 1
SQSTM1-209ENST00000504627 SLFN13Q68D06 897 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms