RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 STAG2Q8N3U4 1231 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 SH3RF3Q8TEJ3 882 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 ARHGEF1Q92888 912 aaKnown RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 KAT14Q9H8E8 782 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 CTNND2Q9UQB3 1225 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 MYH1P12882 1939 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 COBLO75128 1261 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 KIF5BP33176 963 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 USP5P45974 858 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 DIXDC1Q155Q3 683 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 FAM182BQ5T319 152 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 TYW1BQ6NUM6 668 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 PNMA1Q8ND90 353 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 RASGRP4Q8TDF6 673 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 C8orf37Q96NL8 207 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 DESI2Q9BSY9 194 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 ADD3Q9UEY8 706 aaKnown RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 CCNL1Q9UK58 526 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 RTCBQ9Y3I0 505 aaKnown RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 PARP3Q9Y6F1 533 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 LY75O60449 1722 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 ROBO3Q96MS0 1386 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 LDHBP07195 334 aaKnown RBP11.18□□□□□ -0.62
CLIP1-204ENST00000501271 PBX1P40424 430 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 MTF1Q14872 753 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 VPS72Q15906 364 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 SLC35G1Q2M3R5 365 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 SPTY2D1Q68D10 685 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-204ENST00000501271 BLIDQ8IZY5 108 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 C4orf32Q8N8J7 132 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 IQUBQ8NA54 791 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 GPR101Q96P66 508 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-204ENST00000501271 ANKIB1Q9P2G1 1089 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 USP17L3A6NCW0 530 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 USP17L4A6NCW7 530 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 URI1O94763 535 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-204ENST00000501271 CDC25AP30304 524 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 NFIXQ14938 502 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 TMED8Q6PL24 325 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-204ENST00000501271 USP17L1Q7RTZ2 530 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 DGKHQ86XP1 1220 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 SLC44A5Q8NCS7 719 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 WDR24Q96S15 920 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 MAD2L2Q9UI95 211 aa11.18□□□□□ -0.62
CLIP1-204ENST00000501271 SOWAHDA6NJG2 315 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 AKR1B15C9JRZ8 316 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-204ENST00000501271 M0R2N6 131 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 H2AFXP16104 143 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-204ENST00000501271 CALML3P27482 149 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 RBL2Q08999 1139 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 GRM4Q14833 912 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 IGSF22Q8N9C0 903 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 ZNF446Q9NWS9 450 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 PCDHA4Q9UN74 947 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 DDX60LQ5H9U9 1706 aaKnown RBP11.17□□□□□ -0.62
CLIP1-204ENST00000501271 CYTH3O43739 400 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 GTPBP6O43824 516 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-204ENST00000501271 DMTNQ08495 405 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 WDR66Q8TBY9 1149 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 ANKS1AQ92625 1134 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 NGLY1Q96IV0 654 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 PANX2Q96RD6 677 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 MRPL44Q9H9J2 332 aaKnown RBP11.17□□□□□ -0.62
CLIP1-204ENST00000501271 SH3GLB2Q9NR46 395 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 THSD7AQ9UPZ6 1657 aa11.17□□□□□ -0.62
CLIP1-204ENST00000501271 GOLGA6L9A6NEM1 432 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 GNG11P61952 73 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 GRAPQ13588 217 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 KARSQ15046 597 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 ARHGAP29Q52LW3 1261 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 RRAGBQ5VZM2 374 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 ARL6IP4Q66PJ3 421 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 WWC2Q6AWC2 1192 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 RASGRP2Q7LDG7 609 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 GRAPLQ8TC17 118 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 TGFBRAP1Q8WUH2 860 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 CPLX3Q8WVH0 158 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 MKNK2Q9HBH9 465 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 MTMR7Q9Y216 660 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 TADA3O75528 432 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 TSPY3P0CV98 308 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 TSPY8P0CW00 308 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 LONP1P36776 959 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 CCT6AP40227 531 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 RAD9BQ6WBX8 426 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 KIFC2Q96AC6 838 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 CTAGE1Q96RT6 745 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 PYM1Q9BRP8 204 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 CARD6Q9BX69 1037 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 SAP30BPQ9UHR5 308 aaKnown RBP11.16□□□□□ -0.62
CLIP1-204ENST00000501271 PRDM4Q9UKN5 801 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 PCDHA6Q9UN73 950 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 PCDHA8Q9Y5H6 950 aa11.16□□□□□ -0.62
CLIP1-204ENST00000501271 SNED1Q8TER0 1413 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 A0A0U1RQJ8 604 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 PP2D1A8MPX8 630 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 MFAP3LO75121 409 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 GYPCP04921 128 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 CLCN6P51797 869 aa11.15□□□□□ -0.62
CLIP1-204ENST00000501271 KRT31Q15323 416 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms