RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 INCENPQ9NQS7 918 aa12.97□□□□□ -0.33
SHROOM3-210ENST00000497440 ZNF214Q9UL59 606 aaPredicted RBP12.97□□□□□ -0.33
SHROOM3-210ENST00000497440 PPP1R9AQ9ULJ8 1098 aa12.97□□□□□ -0.33
SHROOM3-210ENST00000497440 SLC15A5A6NIM6 579 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TRIM6-TRIM34B2RNG4 842 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 HIP1O00291 1037 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 VWA5AO00534 786 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 ECM2O94769 699 aaPredicted RBP12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 SGPL1O95470 568 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TTLL1O95922 423 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 NDUFB10O96000 172 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 HMGCRP04035 888 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 SLC3A2P08195 630 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TFAP4Q01664 338 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TMEM132BQ14DG7 1078 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TTC22Q5TAA0 569 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TRMT44Q8IYL2 757 aaKnown RBP12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 SPICE1Q8N0Z3 855 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 NKX2-3Q8TAU0 364 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 TRIB2Q92519 343 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 ATG4CQ96DT6 458 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 PAGR1Q9BTK6 254 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 UNC93B1Q9H1C4 597 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 IL25Q9H293 177 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 GOPCQ9HD26 462 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 FBXO28Q9NVF7 368 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 CLIP2Q9UDT6 1046 aa12.96□□□□□ -0.33
SHROOM3-210ENST00000497440 LAMA3Q16787 3333 aa12.96□□□□□ -0.34
SHROOM3-210ENST00000497440 ZNF236Q9UL36 1845 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 RPTORQ8N122 1335 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 FLOT1O75955 427 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 CTDSPL2Q05D32 466 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 MAP2K5Q13163 448 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 RIOX2Q8IUF8 465 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 U2AF1L4Q8WU68 220 aaKnown RBP12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 RILPL2Q969X0 211 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 GMCL1Q96IK5 515 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 DSCC1Q9BVC3 393 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 MROH8Q9H579 483 aa12.95□□□□□ -0.34
SHROOM3-210ENST00000497440 MYH4Q9Y623 1939 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 TSPY3P0CV98 308 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 TSPY8P0CW00 308 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 RGS2P41220 211 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 MNX1P50219 401 aaPredicted RBP12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 MFAP1P55081 439 aaKnown RBP12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 TRIM32Q13049 653 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 FAM47AQ5JRC9 791 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 PPP4R3BQ5MIZ7 849 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 FAM83BQ5T0W9 1011 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 RCSD1Q6JBY9 416 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 PRPF38AQ8NAV1 312 aaKnown RBP12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 STAG1Q8WVM7 1258 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 TANGO6Q9C0B7 1094 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 RNF208Q9H0X6 261 aa12.94□□□□□ -0.34
SHROOM3-210ENST00000497440 SLC25A27O95847 323 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 FDX1P10109 184 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 ERCC3P19447 782 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 CYP2B6P20813 491 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 AKNAD1Q5T1N1 836 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 STK11IPQ8N1F8 1099 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 ANKS1AQ92625 1134 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 TTC14Q96N46 770 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 APBA2Q99767 749 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 SLC38A10Q9HBR0 1119 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 FLRT1Q9NZU1 646 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 OGDHLQ9ULD0 1010 aa12.93□□□□□ -0.34
SHROOM3-210ENST00000497440 COL11A1P12107 1806 aaPredicted RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 ZNFX1Q9P2E3 1918 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 COBLO75128 1261 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 SNHG28P0DPA3 235 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 CHMLP26374 656 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 STAT3P40763 770 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 OAZ1P54368 228 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 CACNB2Q08289 660 aaPredicted RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 CCL14Q16627 93 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 OLFML2BQ68BL8 750 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 LHX8Q68G74 356 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 CWC27Q6UX04 472 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 BTNL9Q6UXG8 535 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 TBC1D10CQ8IV04 446 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 NPLOC4Q8TAT6 608 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 NUP88Q99567 741 aaPredicted RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 SLF1Q9BQI6 1058 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 HMX1Q9NP08 348 aaPredicted RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 FEM1BQ9UK73 627 aa12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 DIS3Q9Y2L1 958 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-210ENST00000497440 SZT2Q5T011 3432 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 DNAJC25-GNG10A0A024R161 153 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 NMT2O60551 498 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 ATP2B2Q01814 1243 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 SLFN13Q68D06 897 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 ANKLE1Q8NAG6 615 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 DEFB118Q96PH6 123 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 RIPK3Q9Y572 518 aa12.91□□□□□ -0.34
SHROOM3-210ENST00000497440 ZNF536O15090 1300 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 RAD50Q92878 1312 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 TSPY2A6NKD2 308 aa12.9□□□□□ -0.34
SHROOM3-210ENST00000497440 BMP3P12645 472 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms