RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 TFIP11Q9UBB9 837 aaKnown RBP7.14□□□□□ -1.27
SSBP1-213ENST00000496622 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.14□□□□□ -1.27
SSBP1-213ENST00000496622 NUB1Q9Y5A7 615 aa7.14□□□□□ -1.27
SSBP1-213ENST00000496622 CACNA1AO00555 2505 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 NEDD4P46934 1319 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 LCE2BO14633 110 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 FOXN1O15353 648 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 PRC1O43663 620 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 KIF4AO95239 1232 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 CTDNEP1O95476 244 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 XRCC6P12956 609 aaKnown RBP eCLIP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 TNNT3P45378 269 aaPredicted RBP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 GPSM2P81274 684 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 CEBPZQ03701 1054 aaKnown RBP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 KCNH2Q12809 1159 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 KRT32Q14532 448 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 TUSC1Q2TAM9 212 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 SLC27A3Q5K4L6 730 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 CMTR1Q8N1G2 835 aaKnown RBP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 MRGPRX2Q96LB1 330 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 NAPBQ9H115 298 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 MTMR6Q9Y217 621 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 SUGT1Q9Y2Z0 365 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 GFRA3O60609 400 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 PEX14O75381 377 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 PAX3P23760 479 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 PDIA3P30101 505 aaKnown RBP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 MECOMQ03112 1051 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 GRAPQ13588 217 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 FBXO33Q7Z6M2 555 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 USP48Q86UV5 1035 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 MICALL1Q8N3F8 863 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 GRAPLQ8TC17 118 aaPredicted RBP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 FOXJ1Q92949 421 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 MXD3Q9BW11 206 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 FTOQ9C0B1 505 aaKnown RBP eCLIP7.13□□□□□ -1.27
SSBP1-213ENST00000496622 ZSWIM5Q9P217 1185 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 POLLQ9UGP5 575 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 RTL9Q8NET4 1388 aa7.13□□□□□ -1.27
SSBP1-213ENST00000496622 COL5A3P25940 1745 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 GDF9O60383 454 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 UFL1O94874 794 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 ZSCAN22P10073 491 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 ADD1P35611 737 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 LRRFIP1Q32MZ4 808 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 C4orf48Q5BLP8 95 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 MICU3Q86XE3 530 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 MB21D2Q8IYB1 491 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 GTF3C6Q969F1 213 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 AIFM3Q96NN9 605 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 PRDM6Q9NQX0 595 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 SH2B1Q9NRF2 756 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 PNMA2Q9UL42 364 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 DDX60Q8IY21 1712 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 RFX7Q2KHR2 1363 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 KLF18A0A0U1RQI7 1052 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 F8W031 263 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 PPFIA4O75335 1185 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 OFD1O75665 1012 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 HMGB2P26583 209 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 NAA16Q6N069 864 aaPredicted RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 ZSCAN25Q6NSZ9 544 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 RALYLQ86SE5 291 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 FAM122AQ96E09 287 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 FAM210AQ96ND0 272 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 RIOK1Q9BRS2 568 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 NOL10Q9BSC4 688 aaKnown RBP7.12□□□□□ -1.27
SSBP1-213ENST00000496622 MTFR1LQ9H019 292 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 KCNQ5Q9NR82 932 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 C4BP0C0L5 1744 aa7.12□□□□□ -1.27
SSBP1-213ENST00000496622 MYO5AQ9Y4I1 1855 aaKnown RBP7.11□□□□□ -1.27
SSBP1-213ENST00000496622 ANKRD36CQ5JPF3 1778 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 AKAP11Q9UKA4 1901 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 KLHL33A6NCF5 533 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 GOLGA6L22H0YM25 854 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 F13A1P00488 732 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 CYP2D6P10635 497 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 CHRNA5P30532 468 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 ST5P78524 1137 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 UVSSAQ2YD98 709 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 LRCH2Q5VUJ6 765 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 NCOA7Q8NI08 942 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 PHKBQ93100 1093 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 NSUN4Q96CB9 384 aaKnown RBP7.11□□□□□ -1.27
SSBP1-213ENST00000496622 ZSCAN31Q96LW9 406 aaPredicted RBP7.11□□□□□ -1.27
SSBP1-213ENST00000496622 GNL3LQ9NVN8 582 aaKnown RBP7.11□□□□□ -1.27
SSBP1-213ENST00000496622 TMEM63CQ9P1W3 806 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 CTNNA3Q9UI47 895 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 TLL2Q9Y6L7 1015 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 WDR33Q9C0J8 1336 aaKnown RBP7.11□□□□□ -1.27
SSBP1-213ENST00000496622 UQCRHLA0A096LP55 91 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 MAGEB6P1A0A0J9YX57 407 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 PTPDC1A2A3K4 754 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 USP17L12C9JPN9 530 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 USP17L21D6R901 530 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 DYNC1I1O14576 645 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 NMT2O60551 498 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 UQCRHP07919 91 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 SLURP2P0DP57 97 aa7.11□□□□□ -1.27
SSBP1-213ENST00000496622 MCM5P33992 734 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms