RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 KLRC3Q07444 240 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 TMEM132BQ14DG7 1078 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 FAM83BQ5T0W9 1011 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 LHX8Q68G74 356 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 TICAM2Q86XR7 235 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 ABRAQ8N0Z2 381 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 DIS3LQ8TF46 1054 aaKnown RBP15.18■□□□□ 0.02
PTPRF-214ENST00000496043 MKL1Q969V6 931 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 C11orf49Q9H6J7 331 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 PPP1R9AQ9ULJ8 1098 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 ROBO3Q96MS0 1386 aa15.18■□□□□ 0.02
PTPRF-214ENST00000496043 PLXNB2O15031 1838 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 VWA5AO00534 786 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 TSPY3P0CV98 308 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 TSPY8P0CW00 308 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 FCER1AP12319 257 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 CNGA1P29973 690 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 STAT3P40763 770 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 PPARAQ07869 468 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 NEDD1Q8NHV4 660 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 HELLSQ9NRZ9 838 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 FBXO28Q9NVF7 368 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 MTMR4Q9NYA4 1195 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 BRCA2P51587 3418 aa15.17■□□□□ 0.02
PTPRF-214ENST00000496043 MKI67P46013 3256 aaKnown RBP15.16■□□□□ 0.02
PTPRF-214ENST00000496043 IGKV6D-41A0A0C4DH26 115 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 COBLO75128 1261 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 TTLL1O95922 423 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 CYP2C19P33261 490 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 MNX1P50219 401 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-214ENST00000496043 TFAP4Q01664 338 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 OLFML2BQ68BL8 750 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 CHRDL2Q6WN34 429 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 RIOX2Q8IUF8 465 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 PRPF38AQ8NAV1 312 aaKnown RBP15.16■□□□□ 0.02
PTPRF-214ENST00000496043 LNPKQ9C0E8 428 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 SYNPO2Q9UMS6 1093 aa15.16■□□□□ 0.02
PTPRF-214ENST00000496043 MSCO60682 206 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 NDUFB10O96000 172 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 IGHA2P01877 340 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 COPB2P35606 906 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 FAM47AQ5JRC9 791 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 PPP4R3BQ5MIZ7 849 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 B4GALNT3Q6L9W6 998 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 CCDC129Q6ZRS4 1044 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 SMC5Q8IY18 1101 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 EXOC6Q8TAG9 804 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 CEP95Q96GE4 821 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 NUP88Q99567 741 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-214ENST00000496043 SLF1Q9BQI6 1058 aa15.15■□□□□ 0.02
PTPRF-214ENST00000496043 CTDP1Q9Y5B0 961 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-214ENST00000496043 TRIM6-TRIM34B2RNG4 842 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 ZBED4O75132 1171 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 IGHDP01880 384 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 KCTD2Q14681 263 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 ALX1Q15699 326 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 MCMDC2Q4G0Z9 681 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 MMP19Q99542 508 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 DDX20Q9UHI6 824 aaKnown RBP15.14■□□□□ 0.01
PTPRF-214ENST00000496043 FEM1BQ9UK73 627 aa15.14■□□□□ 0.01
PTPRF-214ENST00000496043 CTDSPL2Q05D32 466 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 SLFN13Q68D06 897 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 CHD1LQ86WJ1 897 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 TRPV1Q8NER1 839 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 REPS2Q8NFH8 660 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 RILPL2Q969X0 211 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 ANAPC4Q9UJX5 808 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 ZNF214Q9UL59 606 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-214ENST00000496043 MYH8P13535 1937 aa15.13■□□□□ 0.01
PTPRF-214ENST00000496043 CYBAP13498 195 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 NUCB1Q02818 461 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 VPS53Q5VIR6 699 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 ARRDC4Q8NCT1 418 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 GMCL1P1Q8NEA9 526 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 KIFC2Q96AC6 838 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 MAML3Q96JK9 1138 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 FAM227BQ96M60 508 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 TEX13BQ9BXU2 312 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 INCENPQ9NQS7 918 aa15.12■□□□□ 0.01
PTPRF-214ENST00000496043 RBM27Q9P2N5 1060 aaKnown RBP15.12■□□□□ 0.01
PTPRF-214ENST00000496043 DIS3Q9Y2L1 958 aaKnown RBP15.12■□□□□ 0.01
PTPRF-214ENST00000496043 TSPY2A6NKD2 308 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 ATP2A1O14983 1001 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 FOXP2O15409 715 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 FGAP02671 866 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 COL6A1P12109 1028 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 BMP3P12645 472 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 SLC4A3P48751 1232 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 ZNF792Q3KQV3 632 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 PRAMEF19Q5SWL8 479 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 PLEKHM2Q8IWE5 1019 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 C7orf61Q8IZ16 206 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 CPXCR1Q8N123 301 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 LRRC47Q8N1G4 583 aaKnown RBP15.11■□□□□ 0.01
PTPRF-214ENST00000496043 CHURC1Q8WUH1 139 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 DDX11Q96FC9 970 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 OSBPL3Q9H4L5 887 aa15.11■□□□□ 0.01
PTPRF-214ENST00000496043 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.11■□□□□ 0.01
PTPRF-214ENST00000496043 SUPT16HQ9Y5B9 1047 aaKnown RBP15.11■□□□□ 0.01
PTPRF-214ENST00000496043 RLFQ13129 1914 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms