RNA–Protein interactions for RNA: ENST00000496026.1

HDAC9-226, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 860 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-226ENST00000496026 GMCL1Q96IK5 515 aa17.28■□□□□ 0.36
HDAC9-226ENST00000496026 UPF3BQ9BZI7 483 aaKnown RBP17.28■□□□□ 0.36
HDAC9-226ENST00000496026 LY9Q9HBG7 655 aa17.28■□□□□ 0.36
HDAC9-226ENST00000496026 ZSWIM6Q9HCJ5 1215 aa17.28■□□□□ 0.36
HDAC9-226ENST00000496026 GPHNQ9NQX3 736 aaPredicted RBP17.28■□□□□ 0.36
HDAC9-226ENST00000496026 SAGE1Q9NXZ1 904 aa17.28■□□□□ 0.36
HDAC9-226ENST00000496026 CCDC69A6NI79 296 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 TBC1D8O95759 1140 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 BMP3P12645 472 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 IKQ13123 557 aaPredicted RBP17.27■□□□□ 0.36
HDAC9-226ENST00000496026 CRHR2Q13324 411 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 SAMD1Q6SPF0 538 aaPredicted RBP17.27■□□□□ 0.36
HDAC9-226ENST00000496026 CATIPQ7Z7H3 387 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 DCAF4Q8WV16 495 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 SENP2Q9HC62 589 aa17.27■□□□□ 0.36
HDAC9-226ENST00000496026 LOC285556D6RIA3 1793 aa17.27■□□□□ 0.35
HDAC9-226ENST00000496026 FLOT1O75955 427 aa17.26■□□□□ 0.35
HDAC9-226ENST00000496026 PDHBP11177 359 aa17.26■□□□□ 0.35
HDAC9-226ENST00000496026 LIFRP42702 1097 aa17.26■□□□□ 0.35
HDAC9-226ENST00000496026 COG2Q14746 738 aa17.26■□□□□ 0.35
HDAC9-226ENST00000496026 Q6ZUG5 572 aa17.26■□□□□ 0.35
HDAC9-226ENST00000496026 P2RX7Q99572 595 aaKnown RBP17.26■□□□□ 0.35
HDAC9-226ENST00000496026 FRMPD2Q68DX3 1309 aaPredicted RBP17.25■□□□□ 0.35
HDAC9-226ENST00000496026 RBM25P49756 843 aaKnown RBP17.25■□□□□ 0.35
HDAC9-226ENST00000496026 SYNE3Q6ZMZ3 975 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 KCTD1Q719H9 257 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 RASGRP2Q7LDG7 609 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 HOXC10Q9NYD6 342 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 FEM1BQ9UK73 627 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 PTPRFP10586 1907 aa17.25■□□□□ 0.35
HDAC9-226ENST00000496026 TMEM232C9JQI7 657 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 TLR2O60603 784 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 HSPA1AP0DMV8 641 aaKnown RBP17.24■□□□□ 0.35
HDAC9-226ENST00000496026 HSPA1BP0DMV9 641 aaKnown RBP17.24■□□□□ 0.35
HDAC9-226ENST00000496026 HERVK_113P62684 666 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 ZNF654Q8IZM8 581 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 CHURC1Q8WUH1 139 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 NUP133Q8WUM0 1156 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 IL17RAQ96F46 866 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 CFHR5Q9BXR6 569 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 GPCPD1Q9NPB8 672 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 PDRG1Q9NUG6 133 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 FBXO28Q9NVF7 368 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 TSKSQ9UJT2 592 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 NAP1L2Q9ULW6 460 aaPredicted RBP17.24■□□□□ 0.35
HDAC9-226ENST00000496026 SLC12A7Q9Y666 1083 aa17.24■□□□□ 0.35
HDAC9-226ENST00000496026 MYH4Q9Y623 1939 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 PARP1P09874 1014 aaKnown RBP17.23■□□□□ 0.35
HDAC9-226ENST00000496026 SNHG28P0DPA3 235 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 GCLCP48506 637 aaPredicted RBP17.23■□□□□ 0.35
HDAC9-226ENST00000496026 STAT2P52630 851 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 ZNF543Q08ER8 600 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 ASPRV1Q53RT3 343 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 GPATCH4Q5T3I0 446 aaKnown RBP17.23■□□□□ 0.35
HDAC9-226ENST00000496026 FAM160B2Q86V87 743 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 SGMS1Q86VZ5 419 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 PRPF38AQ8NAV1 312 aaKnown RBP17.23■□□□□ 0.35
HDAC9-226ENST00000496026 GTF3C2Q8WUA4 911 aaPredicted RBP17.23■□□□□ 0.35
HDAC9-226ENST00000496026 BRF1Q92994 677 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 KIFC2Q96AC6 838 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 SLF1Q9BQI6 1058 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 R3HDMLQ9H3Y0 253 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 CPA4Q9UI42 421 aa17.23■□□□□ 0.35
HDAC9-226ENST00000496026 MYPNQ86TC9 1320 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 KLF18A0A0U1RQI7 1052 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 SPDYE16A6NNV3 312 aaPredicted RBP17.22■□□□□ 0.35
HDAC9-226ENST00000496026 DDAH1O94760 285 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 GOLGA8HP0CJ92 632 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 CALM1P0DP23 149 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 CALM2P0DP24 149 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 CALM3P0DP25 149 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 DSG3P32926 999 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 NEK4P51957 841 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 ANKRD13CQ8N6S4 541 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 TBC1D32Q96NH3 1257 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 PAGR1Q9BTK6 254 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 MYL10Q9BUA6 226 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 PPP1R9AQ9ULJ8 1098 aa17.22■□□□□ 0.35
HDAC9-226ENST00000496026 CTDP1Q9Y5B0 961 aaPredicted RBP17.22■□□□□ 0.35
HDAC9-226ENST00000496026 FOXN1O15353 648 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 SLC16A2P36021 539 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 APOBRQ0VD83 1088 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 TROAPQ12815 778 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 GRM4Q14833 912 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 TTBK2Q6IQ55 1244 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 FBXL16Q8N461 479 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 CTCFLQ8NI51 663 aaPredicted RBP17.21■□□□□ 0.35
HDAC9-226ENST00000496026 ATG4CQ96DT6 458 aa17.21■□□□□ 0.35
HDAC9-226ENST00000496026 ADGRA2Q96PE1 1338 aa17.21■□□□□ 0.34
HDAC9-226ENST00000496026 ZBTB43O43298 467 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 PLA2G6O60733 806 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 ZBED4O75132 1171 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 KIF5BP33176 963 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 TOB2Q14106 344 aaPredicted RBP17.2■□□□□ 0.34
HDAC9-226ENST00000496026 SYDE2Q5VT97 1194 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 APOA5Q6Q788 366 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 C17orf99Q6UX52 265 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 LBX2Q6XYB7 198 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 MICU3Q86XE3 530 aa17.2■□□□□ 0.34
HDAC9-226ENST00000496026 RAB11FIP4Q86YS3 637 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms