RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	LGR6	Q9HBX8	967 aa		5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	SAGE1	Q9NXZ1	904 aa		5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	ZFAT	Q9P243	1243 aa		5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	PGAP2	Q9UHJ9	254 aa		5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	TLR6	Q9Y2C9	796 aa		5.64	□□□□□ -1.51
VPS52-222	ENST00000495981	TMEM238L	A0A1B0GVL6	79 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	TTC24	A2A3L6	582 aa	Predicted RBP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	TNFRSF10A	O00220	468 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	SOX1	O00570	391 aa	Predicted RBP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	GFRA3	O60609	400 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	MMP20	O60882	483 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	TBC1D8	O95759	1140 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	SSB	P05455	408 aa	Known RBP eCLIP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	THBS1	P07996	1170 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	CELA3A	P09093	270 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	HMOX1	P09601	288 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	EPB42	P16452	691 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	EIF5	P55010	431 aa	Known RBP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	CAP1	Q01518	475 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	FAM160A1	Q05DH4	1040 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	PWP1	Q13610	501 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	RAB33A	Q14088	237 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	MAP3K11	Q16584	847 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	CCDC93	Q567U6	631 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	SAMD5	Q5TGI4	173 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	USP50	Q70EL3	339 aa	Predicted RBP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	LYSMD3	Q7Z3D4	306 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	CCNJL	Q8IV13	435 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	PMEPA1	Q969W9	287 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	MASTL	Q96GX5	879 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	MRFAP1L1	Q96HT8	127 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	KANSL2	Q9H9L4	492 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	BRD7	Q9NPI1	651 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	TIMMDC1	Q9NPL8	285 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	SNTG2	Q9NY99	539 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	UBP1	Q9NZI7	540 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	RAPGEFL1	Q9UHV5	662 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	PDZRN3	Q9UPQ7	1066 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	RIC1	Q4ADV7	1423 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	DUOX1	Q9NRD9	1551 aa		5.63	□□□□□ -1.51
VPS52-222	ENST00000495981	EYS	Q5T1H1	3165 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	SASH3	O75995	380 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	PF4	P02776	101 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	EDN3	P14138	238 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	TARS	P26639	723 aa	Known RBP	5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	LIG3	P49916	1009 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	LAPTM4A	Q15012	233 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	TTC39B	Q5VTQ0	682 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	PCNX4	Q63HM2	1172 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	RGMB	Q6NW40	437 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	SV2B	Q7L1I2	683 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	RELL1	Q8IUW5	271 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	CYP4X1	Q8N118	509 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	KCNB2	Q92953	911 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	ZNF496	Q96IT1	587 aa	Predicted RBP	5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	SHD	Q96IW2	340 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	ZKSCAN3	Q9BRR0	538 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	GSX2	Q9BZM3	304 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	RUBCNL	Q9H714	662 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	GPRC5D	Q9NZD1	345 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	SIRPG	Q9P1W8	387 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	STRIP2	Q9ULQ0	834 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	ABCC12	Q96J65	1359 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	PRUNE2	Q8WUY3	3088 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	NUP98	P52948	1817 aa		5.62	□□□□□ -1.51
VPS52-222	ENST00000495981	KLRG2	A4D1S0	409 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	ENC1	O14682	589 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	EFS	O43281	561 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	RAB11FIP3	O75154	756 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	CAMTA2	O94983	1202 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	KIF4A	O95239	1232 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	COL4A1	P02462	1669 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	TFE3	P19532	575 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	GRIA4	P48058	902 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	GMPS	P49915	693 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	LMNB2	Q03252	620 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	SFSWAP	Q12872	951 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	GRIN2C	Q14957	1233 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	PTPRO	Q16827	1216 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	KANK3	Q6NY19	840 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	FBXO46	Q6PJ61	603 aa	Predicted RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	TPTE2	Q6XPS3	522 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	FAM169B	Q8N8A8	192 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	IL17RE	Q8NFR9	667 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	HHIP	Q96QV1	700 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	PRO3102	Q9H379	93 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	LIN7B	Q9HAP6	207 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	CWC22	Q9HCG8	908 aa	Known RBP	5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	GPAM	Q9HCL2	828 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	AKAP2	Q9Y2D5	859 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	MSRB2	Q9Y3D2	182 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	KNSTRN	Q9Y448	316 aa		5.61	□□□□□ -1.51
VPS52-222	ENST00000495981	DDX60	Q8IY21	1712 aa	Known RBP	5.6	□□□□□ -1.51
VPS52-222	ENST00000495981	METTL12	A8MUP2	240 aa		5.6	□□□□□ -1.51
VPS52-222	ENST00000495981	ADM5	C9JUS6	153 aa		5.6	□□□□□ -1.51
VPS52-222	ENST00000495981	NRG2	O14511	850 aa	Predicted RBP	5.6	□□□□□ -1.51
VPS52-222	ENST00000495981	CAPN5	O15484	640 aa	Predicted RBP	5.6	□□□□□ -1.51
VPS52-222	ENST00000495981	DIAPH1	O60610	1272 aa	Known RBP	5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms