RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 SENP2Q9HC62 589 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 GDPD2Q9HCC8 539 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 DDX4Q9NQI0 724 aaKnown RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 FAM217BQ9NTX9 383 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 RTEL1Q9NZ71 1219 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 TFIP11Q9UBB9 837 aaKnown RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 RCOR1Q9UKL0 485 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 OTOFQ9HC10 1997 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 CTNND1O60716 968 aaKnown RBP11.82□□□□□ -0.52
HDAC3-214ENST00000495485 USP2O75604 605 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-214ENST00000495485 TOP1P11387 765 aaKnown RBP11.82□□□□□ -0.52
HDAC3-214ENST00000495485 SMARCA1P28370 1054 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 PLCD1P51178 756 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 INHBEP58166 350 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 GUCY1B3Q02153 619 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 TROAPQ12815 778 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 ZSCAN23Q3MJ62 389 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.82□□□□□ -0.52
HDAC3-214ENST00000495485 LEO1Q8WVC0 666 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-214ENST00000495485 DYNLL2Q96FJ2 89 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 POLR3EQ9NVU0 708 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 CEP131Q9UPN4 1083 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 SSC5DA1L4H1 1573 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 DOCK1Q14185 1865 aa11.82□□□□□ -0.52
HDAC3-214ENST00000495485 DDTLA6NHG4 134 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 MMP1P03956 469 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 U2AF2P26368 475 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 CALML3P27482 149 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 ZNF157P51786 506 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 KIF23Q02241 960 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 STK38Q15208 465 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 MYSM1Q5VVJ2 828 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 LRSAM1Q6UWE0 723 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 TMTC3Q6ZXV5 915 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 NBPF11Q86T75 865 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 BICD2Q8TD16 824 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 CCDC12Q8WUD4 166 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 SLC10A4Q96EP9 437 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 WRNIP1Q96S55 665 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 SH3GLB2Q9NR46 395 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 DDX19AQ9NUU7 478 aaKnown RBP11.81□□□□□ -0.52
HDAC3-214ENST00000495485 STX8Q9UNK0 236 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 THSD7BQ9C0I4 1608 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 ATAD5Q96QE3 1844 aa11.81□□□□□ -0.52
HDAC3-214ENST00000495485 PLIN4Q96Q06 1357 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 CTAGE5O15320 804 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 BMP15O95972 392 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 ASNSP08243 561 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 SLC10A3P09131 477 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 PPATQ06203 517 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 GRM4Q14833 912 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 RILPL1Q5EBL4 403 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 PRAMEF18Q5VWM3 479 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 CCDC73Q6ZRK6 1079 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 SH3BP5LQ7L8J4 393 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 ERO1BQ86YB8 467 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 NOL7Q9UMY1 257 aaKnown RBP11.8□□□□□ -0.52
HDAC3-214ENST00000495485 SIPA1L1O43166 1804 aa11.8□□□□□ -0.52
HDAC3-214ENST00000495485 FSD2A1L4K1 749 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 CA12O43570 354 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 GADD45BO75293 160 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-214ENST00000495485 TTLL1O95922 423 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 PARP1P09874 1014 aaKnown RBP11.79□□□□□ -0.52
HDAC3-214ENST00000495485 KRT2P35908 639 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 ME1P48163 572 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 MAP2K1Q02750 393 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-214ENST00000495485 GABPAQ06546 454 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 SREBF2Q12772 1141 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 SLC4A8Q2Y0W8 1093 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 GALNT17Q6IS24 598 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 TATDN1Q6P1N9 297 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 NOSTRINQ8IVI9 506 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 SCYL3Q8IZE3 742 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 CCDC82Q8N4S0 544 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 CCDC148Q8NFR7 591 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 NKX2-3Q8TAU0 364 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 CAPNS2Q96L46 248 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 TMEM47Q9BQJ4 181 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC3-214ENST00000495485 PICK1Q9NRD5 415 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 TMEM63CQ9P1W3 806 aa11.79□□□□□ -0.52
HDAC3-214ENST00000495485 V9GY48 417 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-214ENST00000495485 A0A1W2PQ27 194 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 A0A1W2PQ64 194 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 A0A1W2PQD8 194 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 MANSC4A6NHS7 340 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-214ENST00000495485 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 PHF20L1A8MW92 1017 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 UBE2Q2LH0YL09 131 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 hCG_1984214I3L0E3 225 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 SPTLC2O15270 562 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 NMT2O60551 498 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 DTNBO60941 627 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 PPFIA3O75145 1194 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 SCG2P13521 617 aa11.78□□□□□ -0.52
HDAC3-214ENST00000495485 NASPP49321 788 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-214ENST00000495485 FMR1Q06787 632 aaKnown RBP eCLIP11.78□□□□□ -0.52
HDAC3-214ENST00000495485 PPIL2Q13356 520 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms