RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	C7orf61	Q8IZ16	206 aa		13.96	□□□□□ -0.17
VTI1A-208	ENST00000494728		A0A0C4DFX4	3053 aa		13.96	□□□□□ -0.18
VTI1A-208	ENST00000494728	LCT	P09848	1927 aa		13.96	□□□□□ -0.18
VTI1A-208	ENST00000494728	LAMA4	Q16363	1823 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	IGKV6D-41	A0A0C4DH26	115 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	MINDY4B	A8MYZ0	360 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	PRDM1	O75626	825 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	MX1	P20591	662 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	FAM83B	Q5T0W9	1011 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	CCDC129	Q6ZRS4	1044 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	TRMT44	Q8IYL2	757 aa	Known RBP	13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	REPS2	Q8NFH8	660 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	DDRGK1	Q96HY6	314 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	YTHDC1	Q96MU7	727 aa	Known RBP	13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	NBPF3	Q9H094	633 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	C11orf49	Q9H6J7	331 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	SH2D4A	Q9H788	454 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	KANSL2	Q9H9L4	492 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	HOXC10	Q9NYD6	342 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	ADAMTS5	Q9UNA0	930 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	NR2E3	Q9Y5X4	410 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	IVNS1ABP	Q9Y6Y0	642 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	LRRC37A2	A6NM11	1700 aa		13.95	□□□□□ -0.18
VTI1A-208	ENST00000494728	GLRX3	O76003	335 aa	Known RBP	13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	ZFY	P08048	801 aa	Predicted RBP	13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	CYBA	P13498	195 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	TDO2	P48775	406 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	PLS1	Q14651	629 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	GIMAP6	Q6P9H5	292 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	SHCBP1	Q8NEM2	672 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	FSD1	Q9BTV5	496 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	ZNF214	Q9UL59	606 aa	Predicted RBP	13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	UNC80	Q8N2C7	3258 aa		13.94	□□□□□ -0.18
VTI1A-208	ENST00000494728	RAD21	O60216	631 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	SYN1	P17600	705 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	CAPN2	P17655	700 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	LRRC26	Q2I0M4	334 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	ZMYM1	Q5SVZ6	1142 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	NCAPG2	Q86XI2	1143 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	IFNL3	Q8IZI9	196 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	MB21D1	Q8N884	522 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	STAP2	Q9UGK3	403 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	PPP1R9A	Q9ULJ8	1098 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	TACC3	Q9Y6A5	838 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	PLIN4	Q96Q06	1357 aa		13.93	□□□□□ -0.18
VTI1A-208	ENST00000494728	VWA5A	O00534	786 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	SOX1	O00570	391 aa	Predicted RBP	13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	NDUFB10	O96000	172 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	VPS53	Q5VIR6	699 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	MFSD14C	Q5VZR4	134 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	ANO1	Q5XXA6	986 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	OLFML2B	Q68BL8	750 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	RASGRP2	Q7LDG7	609 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	CEP95	Q96GE4	821 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	GOPC	Q9HD26	462 aa		13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	DDX20	Q9UHI6	824 aa	Known RBP	13.92	□□□□□ -0.18
VTI1A-208	ENST00000494728	ERC2	O15083	957 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	APP	P05067	770 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	PGK2	P07205	417 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	CNGA1	P29973	690 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	PRAMEF19	Q5SWL8	479 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	DPP9	Q86TI2	863 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	RIOX2	Q8IUF8	465 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	LRRC47	Q8N1G4	583 aa	Known RBP	13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	MAML3	Q96JK9	1138 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	GDF15	Q99988	308 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	MROH8	Q9H579	483 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	MKNK2	Q9HBH9	465 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	INCENP	Q9NQS7	918 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	NYAP2	Q9P242	653 aa		13.91	□□□□□ -0.18
VTI1A-208	ENST00000494728	PATL2	C9JE40	543 aa	Known RBP	13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728		F5H6K3	240 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	STRN	O43815	780 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	GNAT2	P19087	354 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	KLRC3	Q07444	240 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	PPARA	Q07869	468 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	HDAC1	Q13547	482 aa	Predicted RBP	13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	FAM47A	Q5JRC9	791 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	ANKRD45	Q5TZF3	282 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	SLF1	Q9BQI6	1058 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	MTMR4	Q9NYA4	1195 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728	RIPK3	Q9Y572	518 aa		13.9	□□□□□ -0.18
VTI1A-208	ENST00000494728		A0A0D9SFI3	127 aa		13.89	□□□□□ -0.19
VTI1A-208	ENST00000494728	PDE1A	P54750	535 aa		13.89	□□□□□ -0.19
VTI1A-208	ENST00000494728	ABRA	Q8N0Z2	381 aa		13.89	□□□□□ -0.19
VTI1A-208	ENST00000494728	LENG1	Q96BZ8	264 aa	Predicted RBP	13.89	□□□□□ -0.19
VTI1A-208	ENST00000494728	CLIP2	Q9UDT6	1046 aa		13.89	□□□□□ -0.19
VTI1A-208	ENST00000494728	NMT2	O60551	498 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	FCER1A	P12319	257 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	TAL1	P17542	331 aa	Predicted RBP	13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	STAT3	P40763	770 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	MAGEA10	P43363	369 aa	Predicted RBP	13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	CTDSPL2	Q05D32	466 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	ZNF792	Q3KQV3	632 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	GJC2	Q5T442	439 aa	Predicted RBP	13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	CHMP4C	Q96CF2	233 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	LRCH3	Q96II8	777 aa		13.88	□□□□□ -0.19
VTI1A-208	ENST00000494728	FAM227B	Q96M60	508 aa		13.88	□□□□□ -0.19

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