RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZBTB21Q9ULJ3 1066 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 BCS1LQ9Y276 419 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RTL9Q8NET4 1388 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CTIFO43310 598 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SARNPP82979 210 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FILIP1LQ4L180 1135 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 STAG2Q8N3U4 1231 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LINC00301Q8NCQ3 95 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NKX2-3Q8TAU0 364 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 MMRN2Q9H8L6 949 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 BMP2KQ9NSY1 1161 aaPredicted RBP12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TBC1D7Q9P0N9 293 aa12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PUF60Q9UHX1 559 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CYP2C19P33261 490 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PLCD1P51178 756 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 HDXQ7Z353 690 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NSUN4Q96CB9 384 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MAGEC2Q9UBF1 373 aaPredicted RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ANKRD65E5RJM6 399 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ACTN2P35609 894 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 UBXN2AP68543 259 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PTGDRQ13258 359 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 DYMQ7RTS9 669 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RGS22Q8NE09 1264 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RRP36Q96EU6 259 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NCAPGQ9BPX3 1015 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 XRN1Q8IZH2 1706 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ERLIN2O94905 339 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 EPS15P42566 896 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ASIC1P78348 528 aa12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ZCCHC17Q9NP64 241 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MKRN1Q9UHC7 482 aaKnown RBP12.08□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CHMP2AO43633 222 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SORBS3O60504 671 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RHOXF2BP0C7M4 288 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GBP2P32456 591 aaPredicted RBP12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SLC1A4P43007 532 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RILPL1Q5EBL4 403 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ADALQ6DHV7 355 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 USP49Q70CQ1 688 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RHOXF2Q9BQY4 288 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PCDHA5Q9Y5H7 936 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NLGN1Q8N2Q7 840 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CSRNP2Q9H175 543 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 N4BP3O15049 544 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PLS1Q14651 629 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 OTUD6BQ8N6M0 293 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 VPS16Q9H269 839 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ELP1O95163 1332 aa12.07□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ATP1A3P13637 1013 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GRIN1Q05586 938 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 AOC3Q16853 763 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 LONRF3Q496Y0 759 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 LRCH2Q5VUJ6 765 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MICALCLQ6ZW33 695 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RPAINQ86UA6 219 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TEKT1Q969V4 418 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SAMM50Q9Y512 469 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SMCO2A6NFE2 343 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GYS2P54840 703 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 KARSQ15046 597 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 DTHD1Q6ZMT9 781 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 BARGINQ6ZT62 677 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MAEAQ7L5Y9 396 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TDRD3Q9H7E2 651 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 KIAA1468Q9P260 1216 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ARPP21Q9UBL0 812 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 HPS5Q9UPZ3 1129 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ATP2B4P23634 1241 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 IGDCC4Q8TDY8 1250 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TRIM47Q96LD4 638 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NUP88Q99567 741 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 XPO4Q9C0E2 1151 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RABEP2Q9H5N1 569 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 KCNQ5Q9NR82 932 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ZBTB12Q9Y330 459 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TNS2Q63HR2 1409 aa12.06□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 LIG3P49916 1009 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TTLL12Q14166 644 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CCDC174Q6PII3 467 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CCDC84Q86UT8 332 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 KCNF1Q9H3M0 494 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 NFE2L3Q9Y4A8 694 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CHD2O14647 1828 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 WDHD1O75717 1129 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SCG2P13521 617 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 INPP5BP32019 993 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TECP42680 631 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PIGSQ96S52 555 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 RCOR1Q9UKL0 485 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 DDX39AO00148 427 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 MYCNP04198 464 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 GYS1P13807 737 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 PLCG2P16885 1265 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 ETF1P62495 437 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 SF3B3Q15393 1217 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 TBC1D10BQ4KMP7 808 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 CCDC148Q8NFR7 591 aa12.05□□□□□ -0.48
MSH5-SAPCD1-207ENST00000493662 FANCLQ9NW38 375 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms