RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 HAND2P61296 217 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 KLRC3Q07444 240 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 TRIM32Q13049 653 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 SOCS4Q8WXH5 440 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 TRIB2Q92519 343 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 USP6NLQ92738 828 aa29.29■■■□□ 2.28
UPF3A-209ENST00000492270 MOV10L1Q9BXT6 1211 aaKnown RBP29.29■■■□□ 2.28
UPF3A-209ENST00000492270 TTLL1O95922 423 aa29.28■■■□□ 2.28
UPF3A-209ENST00000492270 MFAP1P55081 439 aaKnown RBP29.28■■■□□ 2.28
UPF3A-209ENST00000492270 MKL1Q969V6 931 aa29.28■■■□□ 2.28
UPF3A-209ENST00000492270 SHISA4Q96DD7 197 aa29.28■■■□□ 2.28
UPF3A-209ENST00000492270 NBPF3Q9H094 633 aa29.28■■■□□ 2.28
UPF3A-209ENST00000492270 SPATC1LQ9H0A9 340 aa29.28■■■□□ 2.28
UPF3A-209ENST00000492270 TSPY2A6NKD2 308 aa29.27■■■□□ 2.28
UPF3A-209ENST00000492270 HIP1O00291 1037 aa29.27■■■□□ 2.28
UPF3A-209ENST00000492270 NMT2O60551 498 aa29.27■■■□□ 2.28
UPF3A-209ENST00000492270 IL25Q9H293 177 aa29.27■■■□□ 2.28
UPF3A-209ENST00000492270 ORC4O43929 436 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 RANBP6O60518 1105 aaKnown RBP29.26■■■□□ 2.27
UPF3A-209ENST00000492270 HMGCRP04035 888 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 FGRP09769 529 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 PLS1Q14651 629 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 MB21D1Q8N884 522 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 IL17RBQ9NRM6 502 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 PPP1R9AQ9ULJ8 1098 aa29.26■■■□□ 2.27
UPF3A-209ENST00000492270 RGS2P41220 211 aa29.25■■■□□ 2.27
UPF3A-209ENST00000492270 CCL14Q16627 93 aa29.25■■■□□ 2.27
UPF3A-209ENST00000492270 TOMM22Q9NS69 142 aa29.25■■■□□ 2.27
UPF3A-209ENST00000492270 ADAMTS5Q9UNA0 930 aa29.25■■■□□ 2.27
UPF3A-209ENST00000492270 GJB1P08034 283 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 ERCC3P19447 782 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 PTPREP23469 700 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 MAP2K5Q13163 448 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 TMEM132BQ14DG7 1078 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 RRP12Q5JTH9 1297 aaKnown RBP29.24■■■□□ 2.27
UPF3A-209ENST00000492270 TBC1D10CQ8IV04 446 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 APBA2Q99767 749 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 PLXNA1Q9UIW2 1896 aa29.24■■■□□ 2.27
UPF3A-209ENST00000492270 FRMPD3Q5JV73 1810 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 XRCC5P13010 732 aaKnown RBP29.23■■■□□ 2.27
UPF3A-209ENST00000492270 GMCL1P1Q8NEA9 526 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 NKX2-3Q8TAU0 364 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 CHMP4CQ96CF2 233 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 STX8Q9UNK0 236 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 IVNS1ABPQ9Y6Y0 642 aa29.23■■■□□ 2.27
UPF3A-209ENST00000492270 SLC15A5A6NIM6 579 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 VWA5AO00534 786 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 GJA8P48165 433 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 GRB14Q14449 540 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 REPS2Q8NFH8 660 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 U2AF1L4Q8WU68 220 aaKnown RBP29.22■■■□□ 2.27
UPF3A-209ENST00000492270 SLF1Q9BQI6 1058 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 SYNPO2Q9UMS6 1093 aa29.22■■■□□ 2.27
UPF3A-209ENST00000492270 ZKSCAN1P17029 563 aaPredicted RBP29.21■■■□□ 2.27
UPF3A-209ENST00000492270 SLFN13Q68D06 897 aa29.21■■■□□ 2.27
UPF3A-209ENST00000492270 SHCBP1Q8NEM2 672 aa29.21■■■□□ 2.27
UPF3A-209ENST00000492270 PAK6Q9NQU5 681 aaPredicted RBP29.21■■■□□ 2.27
UPF3A-209ENST00000492270 AKNAD1Q5T1N1 836 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 RASGRP2Q7LDG7 609 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 NCAPG2Q86XI2 1143 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 STAG1Q8WVM7 1258 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 DEFB118Q96PH6 123 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.2■■■□□ 2.26
UPF3A-209ENST00000492270 FLRT1Q9NZU1 646 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 ZNF214Q9UL59 606 aaPredicted RBP29.2■■■□□ 2.26
UPF3A-209ENST00000492270 NEDD4P46934 1319 aa29.2■■■□□ 2.26
UPF3A-209ENST00000492270 SKAP1Q86WV1 359 aa29.19■■■□□ 2.26
UPF3A-209ENST00000492270 NPLOC4Q8TAT6 608 aa29.19■■■□□ 2.26
UPF3A-209ENST00000492270 DSCC1Q9BVC3 393 aa29.19■■■□□ 2.26
UPF3A-209ENST00000492270 SGPL1O95470 568 aa29.18■■■□□ 2.26
UPF3A-209ENST00000492270 PRKAR2AP13861 404 aaKnown RBP29.18■■■□□ 2.26
UPF3A-209ENST00000492270 ADORA2AP29274 412 aa29.18■■■□□ 2.26
UPF3A-209ENST00000492270 MAP3K21Q5TCX8 1036 aa29.18■■■□□ 2.26
UPF3A-209ENST00000492270 MFSD6Q6ZSS7 791 aa29.18■■■□□ 2.26
UPF3A-209ENST00000492270 MROH8Q9H579 483 aa29.18■■■□□ 2.26
UPF3A-209ENST00000492270 ZNF213O14771 459 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 BMP3P12645 472 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 CHMLP26374 656 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 NOVP48745 357 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 PPP4R3BQ5MIZ7 849 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 RIOX2Q8IUF8 465 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 TRMT44Q8IYL2 757 aaKnown RBP29.17■■■□□ 2.26
UPF3A-209ENST00000492270 PRPF38AQ8NAV1 312 aaKnown RBP29.17■■■□□ 2.26
UPF3A-209ENST00000492270 KIFC2Q96AC6 838 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 ISY1Q9ULR0 285 aaKnown RBP29.17■■■□□ 2.26
UPF3A-209ENST00000492270 RPTORQ8N122 1335 aa29.17■■■□□ 2.26
UPF3A-209ENST00000492270 HOXC6P09630 235 aa29.16■■■□□ 2.26
UPF3A-209ENST00000492270 STAT3P40763 770 aa29.16■■■□□ 2.26
UPF3A-209ENST00000492270 CACNB2Q08289 660 aaPredicted RBP29.16■■■□□ 2.26
UPF3A-209ENST00000492270 HMX1Q9NP08 348 aaPredicted RBP29.16■■■□□ 2.26
UPF3A-209ENST00000492270 FEM1BQ9UK73 627 aa29.16■■■□□ 2.26
UPF3A-209ENST00000492270 MTMR7Q9Y216 660 aa29.16■■■□□ 2.26
UPF3A-209ENST00000492270 STRNO43815 780 aa29.15■■■□□ 2.26
UPF3A-209ENST00000492270 MCCP23508 829 aa29.15■■■□□ 2.26
UPF3A-209ENST00000492270 GMCL1Q96IK5 515 aa29.15■■■□□ 2.26
UPF3A-209ENST00000492270 RAD50Q92878 1312 aa29.15■■■□□ 2.26
UPF3A-209ENST00000492270 TMEM232C9JQI7 657 aa29.14■■■□□ 2.26
UPF3A-209ENST00000492270 COBLO75128 1261 aa29.14■■■□□ 2.26
UPF3A-209ENST00000492270 SLC25A27O95847 323 aa29.14■■■□□ 2.26
UPF3A-209ENST00000492270 SLC1A4P43007 532 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms