RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 ASPRV1Q53RT3 343 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 FAM160B2Q86V87 743 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 CHURC1Q8WUH1 139 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 TANGO6Q9C0B7 1094 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 ALDH8A1Q9H2A2 487 aaPredicted RBP23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 RPAP3Q9H6T3 665 aaPredicted RBP23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 ZFYVE28Q9HCC9 887 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 PDRG1Q9NUG6 133 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 FEM1BQ9UK73 627 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 PLA2G6O60733 806 aa23.2■■□□□ 1.3
SHROOM3-209ENST00000490690 CFHR5Q9BXR6 569 aa23.2■■□□□ 1.3
SHROOM3-209ENST00000490690 AGXT2Q9BYV1 514 aa23.2■■□□□ 1.3
SHROOM3-209ENST00000490690 SNHG28P0DPA3 235 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 GCLCP48506 637 aaPredicted RBP23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 STAT2P52630 851 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 TAF1CQ15572 869 aaPredicted RBP23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 CCDC96Q2M329 555 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 GPAT2Q6NUI2 795 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 CATSPERGQ6ZRH7 1159 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 Q6ZUG5 572 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 SPICE1Q8N0Z3 855 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 CTCFLQ8NI51 663 aaPredicted RBP23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 SMCR8Q8TEV9 937 aaPredicted RBP23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 ISY1Q9ULR0 285 aaKnown RBP23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 LOC285556D6RIA3 1793 aa23.19■■□□□ 1.3
SHROOM3-209ENST00000490690 IGF2BP3O00425 579 aaKnown RBP eCLIP23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 PARP1P09874 1014 aaKnown RBP23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 PDHBP11177 359 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 GNAQP50148 359 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 COG2Q14746 738 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 TREML2Q5T2D2 321 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 ZNF654Q8IZM8 581 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 FAM43AQ8N2R8 423 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 MB21D1Q8N884 522 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 NKX2-3Q8TAU0 364 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 CHMP4CQ96CF2 233 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 PTPN18Q99952 460 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 PNMA2Q9UL42 364 aa23.18■■□□□ 1.3
SHROOM3-209ENST00000490690 CCDC196A0A1B0GTZ2 297 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 ST18O60284 1047 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 FLOT1O75955 427 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 FAM83BQ5T0W9 1011 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 JMYQ8N9B5 988 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 PRPF38AQ8NAV1 312 aaKnown RBP23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 LZTS2Q9BRK4 669 aa23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 UPF3BQ9BZI7 483 aaKnown RBP23.17■■□□□ 1.3
SHROOM3-209ENST00000490690 NEK4P51957 841 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 ZNF543Q08ER8 600 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 IKQ13123 557 aaPredicted RBP23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 LBX2Q6XYB7 198 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 BRF1Q92994 677 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 ZIC5Q96T25 663 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 SLF1Q9BQI6 1058 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 LRRC2Q9BYS8 371 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 ASCC2Q9H1I8 757 aaPredicted RBP23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 RBM28Q9NW13 759 aaKnown RBP23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 CTDP1Q9Y5B0 961 aaPredicted RBP23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 PTPRFP10586 1907 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 MYH4Q9Y623 1939 aa23.16■■□□□ 1.3
SHROOM3-209ENST00000490690 ZBTB43O43298 467 aa23.15■■□□□ 1.3
SHROOM3-209ENST00000490690 TROAPQ12815 778 aa23.15■■□□□ 1.3
SHROOM3-209ENST00000490690 TMEM232C9JQI7 657 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 EVCP57679 992 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 GRM4Q14833 912 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 NOM1Q5C9Z4 860 aaKnown RBP23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 APOA5Q6Q788 366 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 NUP133Q8WUM0 1156 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 TCEANC2Q96MN5 208 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 PPP1R9AQ9ULJ8 1098 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 MTMR7Q9Y216 660 aa23.14■■□□□ 1.29
SHROOM3-209ENST00000490690 KLF18A0A0U1RQI7 1052 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 TLR2O60603 784 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 CPA1P15085 419 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 SMARCA1P28370 1054 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 DSG3P32926 999 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 MCM2P49736 904 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 HERVK_113P62684 666 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 BTNL9Q6UXG8 535 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 ZNF274Q96GC6 653 aaPredicted RBP23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 WBP1LQ9NX94 342 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 RNF186Q9NXI6 227 aa23.13■■□□□ 1.29
SHROOM3-209ENST00000490690 ZBED4O75132 1171 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 TRAF1Q13077 416 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 DGKZQ13574 1117 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 KIAA1755Q5JYT7 1200 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 KCTD1Q719H9 257 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 NAP1L2Q9ULW6 460 aaPredicted RBP23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 RABGAP1Q9Y3P9 1069 aa23.12■■□□□ 1.29
SHROOM3-209ENST00000490690 GOLGA8BA8MQT2 603 aa23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 DHX16O60231 1041 aaKnown RBP23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 COPB2P35606 906 aa23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 METAP2P50579 478 aaKnown RBP eCLIP23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 CCNA1P78396 465 aa23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 CPLX2Q6PUV4 134 aaKnown RBP23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 MICU3Q86XE3 530 aa23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 FANCBQ8NB91 859 aa23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 NUP88Q99567 741 aaPredicted RBP23.11■■□□□ 1.29
SHROOM3-209ENST00000490690 PALM3A6NDB9 673 aaPredicted RBP23.1■■□□□ 1.29
SHROOM3-209ENST00000490690 SPDYE16A6NNV3 312 aaPredicted RBP23.1■■□□□ 1.29
SHROOM3-209ENST00000490690 KLRF2D3W0D1 207 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms