RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SPATC1LQ9H0A9 340 aa9.98□□□□□ -0.81
USP39-216ENST00000490193 TTYH1Q9H313 450 aaPredicted RBP9.98□□□□□ -0.81
USP39-216ENST00000490193 PDLIM7Q9NR12 457 aa9.98□□□□□ -0.81
USP39-216ENST00000490193 TNNQ9UQP3 1299 aa9.98□□□□□ -0.81
USP39-216ENST00000490193 SMCHD1A6NHR9 2005 aa9.98□□□□□ -0.81
USP39-216ENST00000490193 ROBO3Q96MS0 1386 aa9.98□□□□□ -0.81
USP39-216ENST00000490193 TTC28Q96AY4 2481 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 A0A1W2PRG0 241 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 COBLO75128 1261 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 SURF6O75683 361 aaKnown RBP9.97□□□□□ -0.81
USP39-216ENST00000490193 COL9A1P20849 921 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 PSEN1P49768 467 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 PLCD1P51178 756 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 OS9Q13438 667 aaPredicted RBP9.97□□□□□ -0.81
USP39-216ENST00000490193 SEPT2Q15019 361 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 LRRC41Q15345 812 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 TRIM60Q495X7 471 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 MAGEB6Q8N7X4 407 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 BADQ92934 168 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 EAF2Q96CJ1 260 aaPredicted RBP9.97□□□□□ -0.81
USP39-216ENST00000490193 MROH8Q9H579 483 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 SLC5A4Q9NY91 659 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 TLR7Q9NYK1 1049 aaKnown RBP9.97□□□□□ -0.81
USP39-216ENST00000490193 NRBP1Q9UHY1 535 aa9.97□□□□□ -0.81
USP39-216ENST00000490193 TRIM43BA6NCK2 446 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 ERCC3P19447 782 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 ADCYAP1R1P41586 468 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 MAP3K12Q12852 859 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 TMEM57Q8N5G2 664 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 MYLIPQ8WY64 445 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 CLUAP1Q96AJ1 413 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 TRIM43Q96BQ3 446 aaPredicted RBP9.96□□□□□ -0.82
USP39-216ENST00000490193 MAML3Q96JK9 1138 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 ANTXR1Q9H6X2 564 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 PRDM5Q9NQX1 630 aaPredicted RBP9.96□□□□□ -0.82
USP39-216ENST00000490193 PHF24Q9UPV7 400 aa9.96□□□□□ -0.82
USP39-216ENST00000490193 BCAR3O75815 825 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 TLE2Q04725 743 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 FAM47AQ5JRC9 791 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 ANO1Q5XXA6 986 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 TMEM179Q6ZVK1 233 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 SH3RF1Q7Z6J0 888 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 SYMPKQ92797 1274 aaKnown RBP9.95□□□□□ -0.82
USP39-216ENST00000490193 FRAT1Q92837 279 aaPredicted RBP9.95□□□□□ -0.82
USP39-216ENST00000490193 TANGO6Q9C0B7 1094 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 CCDC8Q9H0W5 538 aaPredicted RBP9.95□□□□□ -0.82
USP39-216ENST00000490193 RAPGEFL1Q9UHV5 662 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 TACC3Q9Y6A5 838 aa9.95□□□□□ -0.82
USP39-216ENST00000490193 BAZ2AQ9UIF9 1905 aaKnown RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 MAGEB6P1A0A0J9YX57 407 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 KIAA0355O15063 1070 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 SLC25A27O95847 323 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 POLR3DP05423 398 aaPredicted RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 CLTBP09497 229 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 FCER1AP12319 257 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 HOXB3P14651 431 aaPredicted RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 HOXB1P14653 301 aaPredicted RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 FOSL2P15408 326 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 ITGB8P26012 769 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 KIAA1755Q5JYT7 1200 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 SIAH1Q8IUQ4 282 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 CRNKL1Q9BZJ0 848 aaKnown RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 XPNPEP3Q9NQH7 507 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 ADAMTS5Q9UNA0 930 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 DIS3Q9Y2L1 958 aaKnown RBP9.94□□□□□ -0.82
USP39-216ENST00000490193 TMX2Q9Y320 296 aa9.94□□□□□ -0.82
USP39-216ENST00000490193 WDR46O15213 610 aaKnown RBP9.93□□□□□ -0.82
USP39-216ENST00000490193 FLOT1O75955 427 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 RARBP10826 455 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 EPHB4P54760 987 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 TTF1Q15361 905 aaPredicted RBP9.93□□□□□ -0.82
USP39-216ENST00000490193 PRAMEF19Q5SWL8 479 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 ZKSCAN2Q63HK3 967 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 ANKRD33Q7Z3H0 272 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 RNF180Q86T96 592 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 NCAPG2Q86XI2 1143 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 FERMT2Q96AC1 680 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 ATG4CQ96DT6 458 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 RNPC3Q96LT9 517 aaKnown RBP9.93□□□□□ -0.82
USP39-216ENST00000490193 TOX2Q96NM4 488 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 SH2D4AQ9H788 454 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 VCPKMTQ9H867 229 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 DCP1AQ9NPI6 582 aaPredicted RBP9.93□□□□□ -0.82
USP39-216ENST00000490193 MCM9Q9NXL9 1143 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 SWAP70Q9UH65 585 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 CHD9Q3L8U1 2897 aa9.93□□□□□ -0.82
USP39-216ENST00000490193 GREB1LQ9C091 1923 aaPredicted RBP9.93□□□□□ -0.82
USP39-216ENST00000490193 MYH7P12883 1935 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 A0A1W2PQ45 241 aaPredicted RBP9.92□□□□□ -0.82
USP39-216ENST00000490193 A0A1W2PQY0 241 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 TCRBV5S4A2TA0A5A2 114 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 MPHOSPH10O00566 681 aaKnown RBP9.92□□□□□ -0.82
USP39-216ENST00000490193 ADAMTS4O75173 837 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 PDE6AP16499 860 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 TMEM132BQ14DG7 1078 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 ZNF792Q3KQV3 632 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 ERC1Q8IUD2 1116 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 RIOX2Q8IUF8 465 aa9.92□□□□□ -0.82
USP39-216ENST00000490193 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP39-216ENST00000490193 TINF2Q9BSI4 451 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms