RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 F5H6K3 240 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 RAD21O60216 631 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 SLC1A4P43007 532 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 DNM1Q05193 864 aaKnown RBP25.01■■□□□ 1.59
SMC4-221ENST00000489573 KLRC3Q07444 240 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 TAF1DQ9H5J8 278 aaPredicted RBP25.01■■□□□ 1.59
SMC4-221ENST00000489573 SH2D4AQ9H788 454 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 ZNF112Q9UJU3 913 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 SSC5DA1L4H1 1573 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 ATAD5Q96QE3 1844 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 NDUFB10O96000 172 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 MMP1P03956 469 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 FAM173BQ6P4H8 233 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 GMCL1Q96IK5 515 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 CPVLQ9H3G5 476 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 RIOX1Q9H6W3 641 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 VPS54Q9P1Q0 977 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.01■■□□□ 1.59
SMC4-221ENST00000489573 TMX2Q9Y320 296 aa25.01■■□□□ 1.59
SMC4-221ENST00000489573 NCLP19338 710 aaKnown RBP25■■□□□ 1.59
SMC4-221ENST00000489573 ECE1P42892 770 aa25■■□□□ 1.59
SMC4-221ENST00000489573 KRT85P78386 507 aa25■■□□□ 1.59
SMC4-221ENST00000489573 SAFBQ15424 915 aaKnown RBP eCLIP25■■□□□ 1.59
SMC4-221ENST00000489573 BRAPQ7Z569 592 aa25■■□□□ 1.59
SMC4-221ENST00000489573 USP48Q86UV5 1035 aa25■■□□□ 1.59
SMC4-221ENST00000489573 ACER1Q8TDN7 264 aa25■■□□□ 1.59
SMC4-221ENST00000489573 RRP36Q96EU6 259 aaKnown RBP25■■□□□ 1.59
SMC4-221ENST00000489573 UBA5Q9GZZ9 404 aa25■■□□□ 1.59
SMC4-221ENST00000489573 GOPCQ9HD26 462 aa25■■□□□ 1.59
SMC4-221ENST00000489573 KCNJ14Q9UNX9 436 aa25■■□□□ 1.59
SMC4-221ENST00000489573 CNPY2Q9Y2B0 182 aa25■■□□□ 1.59
SMC4-221ENST00000489573 ADM5C9JUS6 153 aa24.99■■□□□ 1.59
SMC4-221ENST00000489573 INPP5BP32019 993 aa24.99■■□□□ 1.59
SMC4-221ENST00000489573 KCTD1Q719H9 257 aa24.99■■□□□ 1.59
SMC4-221ENST00000489573 ISY1Q9ULR0 285 aaKnown RBP24.99■■□□□ 1.59
SMC4-221ENST00000489573 KIF28PB7ZC32 967 aa24.98■■□□□ 1.59
SMC4-221ENST00000489573 GNL2Q13823 731 aaKnown RBP24.98■■□□□ 1.59
SMC4-221ENST00000489573 KRT26Q7Z3Y9 468 aa24.98■■□□□ 1.59
SMC4-221ENST00000489573 SHISA4Q96DD7 197 aa24.98■■□□□ 1.59
SMC4-221ENST00000489573 WRNIP1Q96S55 665 aa24.98■■□□□ 1.59
SMC4-221ENST00000489573 PHF20Q9BVI0 1012 aa24.98■■□□□ 1.59
SMC4-221ENST00000489573 SEC63Q9UGP8 760 aaKnown RBP24.98■■□□□ 1.59
SMC4-221ENST00000489573 POTECB2RU33 542 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 TTBK2Q6IQ55 1244 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 PNMA8AQ86V59 439 aaPredicted RBP24.97■■□□□ 1.59
SMC4-221ENST00000489573 SCYL3Q8IZE3 742 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 SH3GLB2Q9NR46 395 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 DOCK1Q14185 1865 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 EAPPQ56P03 285 aaPredicted RBP24.97■■□□□ 1.59
SMC4-221ENST00000489573 CCDC84Q86UT8 332 aaPredicted RBP24.97■■□□□ 1.59
SMC4-221ENST00000489573 HOMER1Q86YM7 354 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 DIS3L2Q8IYB7 885 aaKnown RBP24.97■■□□□ 1.59
SMC4-221ENST00000489573 TMEM87AQ8NBN3 555 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 VCPKMTQ9H867 229 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 VAT1LQ9HCJ6 419 aa24.97■■□□□ 1.59
SMC4-221ENST00000489573 POLR2AP24928 1970 aaKnown RBP24.96■■□□□ 1.59
SMC4-221ENST00000489573 FIBPO43427 364 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 BMP3P12645 472 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 U2AF2P26368 475 aaKnown RBP eCLIP24.96■■□□□ 1.596e-7■■■■■ 34.1
SMC4-221ENST00000489573 CSPP1Q1MSJ5 1256 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 KLRG1Q96E93 195 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 PIGSQ96S52 555 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 FOXP1Q9H334 677 aaPredicted RBP24.96■■□□□ 1.59
SMC4-221ENST00000489573 GDPD2Q9HCC8 539 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 LMBRD1Q9NUN5 540 aa24.96■■□□□ 1.59
SMC4-221ENST00000489573 PRPF40AO75400 957 aaKnown RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 VEGFAP15692 232 aaPredicted RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 WWC2Q6AWC2 1192 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 ATL3Q6DD88 541 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 HEATR3Q7Z4Q2 680 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 ADGRF4Q8IZF3 695 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 FAM177A1Q8N128 213 aaPredicted RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 GPKOWQ92917 476 aaPredicted RBP eCLIP24.95■■□□□ 1.583e-13■□□□□ 9.7
SMC4-221ENST00000489573 ZNF396Q96N95 335 aaPredicted RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 GLIS2Q9BZE0 524 aaPredicted RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 BRMS1Q9HCU9 246 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 MYH15Q9Y2K3 1946 aa24.95■■□□□ 1.58
SMC4-221ENST00000489573 BAZ2BQ9UIF8 2168 aaKnown RBP24.95■■□□□ 1.58
SMC4-221ENST00000489573 SLC16A2P36021 539 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 CCDC148Q8NFR7 591 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 NUP88Q99567 741 aaPredicted RBP24.94■■□□□ 1.58
SMC4-221ENST00000489573 FEZ1Q99689 392 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 JMJD4Q9H9V9 463 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 PICK1Q9NRD5 415 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 BARHL2Q9NY43 387 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 FZD1Q9UP38 647 aa24.94■■□□□ 1.58
SMC4-221ENST00000489573 BTBD18B2RXH4 712 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 hCG_1984214I3L0E3 225 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 STXBP3O00186 592 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 KRT2P35908 639 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 NLRP5P59047 1200 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 NOL9Q5SY16 702 aaKnown RBP24.93■■□□□ 1.58
SMC4-221ENST00000489573 MYSM1Q5VVJ2 828 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 SPICE1Q8N0Z3 855 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 ZNF713Q8N859 430 aaPredicted RBP24.93■■□□□ 1.58
SMC4-221ENST00000489573 SCAND2PQ9GZW5 306 aaPredicted RBP24.93■■□□□ 1.58
SMC4-221ENST00000489573 TFIP11Q9UBB9 837 aaKnown RBP24.93■■□□□ 1.58
SMC4-221ENST00000489573 CFAP45Q9UL16 551 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 CALML3P27482 149 aa24.93■■□□□ 1.58
SMC4-221ENST00000489573 ZYXQ15942 572 aaKnown RBP24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms