RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 FGRP09769 529 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 TRIM32Q13049 653 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 WDR78Q5VTH9 848 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 LRRC47Q8N1G4 583 aaKnown RBP25.12■■□□□ 1.61
LIME1-207ENST00000489212 MB21D1Q8N884 522 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 TRIB2Q92519 343 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 SPATC1LQ9H0A9 340 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 ADAMTS5Q9UNA0 930 aa25.12■■□□□ 1.61
LIME1-207ENST00000489212 COL11A1P12107 1806 aaPredicted RBP25.12■■□□□ 1.61
LIME1-207ENST00000489212 ORC4O43929 436 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 HMGCRP04035 888 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 GJB1P08034 283 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 HAND2P61296 217 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 NBPF3Q9H094 633 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 CWC22Q9HCG8 908 aaKnown RBP25.11■■□□□ 1.61
LIME1-207ENST00000489212 IL17RBQ9NRM6 502 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 PPP1R9AQ9ULJ8 1098 aa25.11■■□□□ 1.61
LIME1-207ENST00000489212 HIP1O00291 1037 aa25.1■■□□□ 1.61
LIME1-207ENST00000489212 NMT2O60551 498 aa25.1■■□□□ 1.61
LIME1-207ENST00000489212 XRCC5P13010 732 aaKnown RBP25.1■■□□□ 1.61
LIME1-207ENST00000489212 PTPREP23469 700 aa25.1■■□□□ 1.61
LIME1-207ENST00000489212 MFAP1P55081 439 aaKnown RBP25.1■■□□□ 1.61
LIME1-207ENST00000489212 TMEM132BQ14DG7 1078 aa25.1■■□□□ 1.61
LIME1-207ENST00000489212 IL25Q9H293 177 aa25.1■■□□□ 1.61
LIME1-207ENST00000489212 TSPY2A6NKD2 308 aa25.09■■□□□ 1.61
LIME1-207ENST00000489212 RANBP6O60518 1105 aaKnown RBP25.09■■□□□ 1.61
LIME1-207ENST00000489212 RGS2P41220 211 aa25.09■■□□□ 1.61
LIME1-207ENST00000489212 GJA8P48165 433 aa25.09■■□□□ 1.61
LIME1-207ENST00000489212 CCL14Q16627 93 aa25.09■■□□□ 1.61
LIME1-207ENST00000489212 SYNPO2Q9UMS6 1093 aa25.09■■□□□ 1.61
LIME1-207ENST00000489212 SLC15A5A6NIM6 579 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 ERCC3P19447 782 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 MAP2K5Q13163 448 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 GRB14Q14449 540 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 PLS1Q14651 629 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 GMCL1P1Q8NEA9 526 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 SHCBP1Q8NEM2 672 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 REPS2Q8NFH8 660 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 NKX2-3Q8TAU0 364 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 APBA2Q99767 749 aa25.08■■□□□ 1.61
LIME1-207ENST00000489212 PAK6Q9NQU5 681 aaPredicted RBP25.08■■□□□ 1.61
LIME1-207ENST00000489212 VWA5AO00534 786 aa25.07■■□□□ 1.6
LIME1-207ENST00000489212 TBC1D10CQ8IV04 446 aa25.07■■□□□ 1.6
LIME1-207ENST00000489212 U2AF1L4Q8WU68 220 aaKnown RBP25.07■■□□□ 1.6
LIME1-207ENST00000489212 SLF1Q9BQI6 1058 aa25.07■■□□□ 1.6
LIME1-207ENST00000489212 ZKSCAN1P17029 563 aaPredicted RBP25.06■■□□□ 1.6
LIME1-207ENST00000489212 RRP12Q5JTH9 1297 aaKnown RBP25.06■■□□□ 1.6
LIME1-207ENST00000489212 SLFN13Q68D06 897 aa25.06■■□□□ 1.6
LIME1-207ENST00000489212 TOMM22Q9NS69 142 aa25.06■■□□□ 1.6
LIME1-207ENST00000489212 STX8Q9UNK0 236 aa25.06■■□□□ 1.6
LIME1-207ENST00000489212 IVNS1ABPQ9Y6Y0 642 aa25.06■■□□□ 1.6
LIME1-207ENST00000489212 SGPL1O95470 568 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 NOVP48745 357 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 AKNAD1Q5T1N1 836 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 MAP3K21Q5TCX8 1036 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 DEFB118Q96PH6 123 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.05■■□□□ 1.6
LIME1-207ENST00000489212 FLRT1Q9NZU1 646 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 ZNF214Q9UL59 606 aaPredicted RBP25.05■■□□□ 1.6
LIME1-207ENST00000489212 LAMA4Q16363 1823 aa25.05■■□□□ 1.6
LIME1-207ENST00000489212 HOXC6P09630 235 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 PRKAR2AP13861 404 aaKnown RBP25.04■■□□□ 1.6
LIME1-207ENST00000489212 NCAPG2Q86XI2 1143 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 TRMT44Q8IYL2 757 aaKnown RBP25.04■■□□□ 1.6
LIME1-207ENST00000489212 NPLOC4Q8TAT6 608 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 STAG1Q8WVM7 1258 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 DSCC1Q9BVC3 393 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 ZNF236Q9UL36 1845 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 RPTORQ8N122 1335 aa25.04■■□□□ 1.6
LIME1-207ENST00000489212 ADORA2AP29274 412 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 PPP4R3BQ5MIZ7 849 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 MFSD6Q6ZSS7 791 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 RASGRP2Q7LDG7 609 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 RIOX2Q8IUF8 465 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 CHMP4CQ96CF2 233 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 MROH8Q9H579 483 aa25.03■■□□□ 1.6
LIME1-207ENST00000489212 STRNO43815 780 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 BMP3P12645 472 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 CHMLP26374 656 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 STAT3P40763 770 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 CACNB2Q08289 660 aaPredicted RBP25.02■■□□□ 1.6
LIME1-207ENST00000489212 UBE2Q1Q7Z7E8 422 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 PRPF38AQ8NAV1 312 aaKnown RBP25.02■■□□□ 1.6
LIME1-207ENST00000489212 HMX1Q9NP08 348 aaPredicted RBP25.02■■□□□ 1.6
LIME1-207ENST00000489212 FEM1BQ9UK73 627 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 NEDD4P46934 1319 aa25.02■■□□□ 1.6
LIME1-207ENST00000489212 ZNF213O14771 459 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 COBLO75128 1261 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 SLC25A27O95847 323 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 MCCP23508 829 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 SKAP1Q86WV1 359 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 KIFC2Q96AC6 838 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 GMCL1Q96IK5 515 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 CRISPLD2Q9H0B8 497 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 TCP11L1Q9NUJ3 509 aa25.01■■□□□ 1.59
LIME1-207ENST00000489212 ZNFX1Q9P2E3 1918 aaKnown RBP25.01■■□□□ 1.59
LIME1-207ENST00000489212 IGHA2P01877 340 aa25■■□□□ 1.59
LIME1-207ENST00000489212 PCP11498 1178 aaKnown RBP25■■□□□ 1.59
LIME1-207ENST00000489212 TMEM232C9JQI7 657 aa24.99■■□□□ 1.59
LIME1-207ENST00000489212 TFRCP02786 760 aaKnown RBP24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms