RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 ERCC3P19447 782 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 SDSP20132 328 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 PTPREP23469 700 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 CNGA1P29973 690 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 KLRC3Q07444 240 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 KCTD2Q14681 263 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 CWC27Q6UX04 472 aaKnown RBP10.8□□□□□ -0.68
HDAC6-232ENST00000489053 LRRC47Q8N1G4 583 aaKnown RBP10.8□□□□□ -0.68
HDAC6-232ENST00000489053 SHCBP1Q8NEM2 672 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 NEDD1Q8NHV4 660 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 KIFC2Q96AC6 838 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 CEP95Q96GE4 821 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 MOV10L1Q9BXT6 1211 aaKnown RBP10.8□□□□□ -0.68
HDAC6-232ENST00000489053 RNF41Q9H4P4 317 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-232ENST00000489053 MTMR4Q9NYA4 1195 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 BTBD7Q9P203 1132 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 GJD2Q9UKL4 321 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 SYNPO2Q9UMS6 1093 aa10.8□□□□□ -0.68
HDAC6-232ENST00000489053 ZSWIM8A7E2V4 1837 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 CNMDO75829 334 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 SGPL1O95470 568 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 NDUFB10O96000 172 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 SLC1A4P43007 532 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 ALX1Q15699 326 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 CCDC96Q2M329 555 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 MORN1Q5T089 497 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 SLFN13Q68D06 897 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 MFSD6Q6ZSS7 791 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 SIAH1Q8IUQ4 282 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 PRPF38AQ8NAV1 312 aaKnown RBP10.79□□□□□ -0.68
HDAC6-232ENST00000489053 TRIB2Q92519 343 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 NUP88Q99567 741 aaPredicted RBP10.79□□□□□ -0.68
HDAC6-232ENST00000489053 OSBPL3Q9H4L5 887 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 CTNNA3Q9UI47 895 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 FEM1BQ9UK73 627 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 PPP1R9AQ9ULJ8 1098 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 MTMR7Q9Y216 660 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 NR2E3Q9Y5X4 410 aa10.79□□□□□ -0.68
HDAC6-232ENST00000489053 BAZ2AQ9UIF9 1905 aaKnown RBP10.78□□□□□ -0.68
HDAC6-232ENST00000489053 VWA5AO00534 786 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 ZNF213O14771 459 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 FGAP02671 866 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 HSPD1P10809 573 aaKnown RBP10.78□□□□□ -0.68
HDAC6-232ENST00000489053 BMP3P12645 472 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 ADORA2AP29274 412 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 STAT3P40763 770 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 HAND2P61296 217 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 KIAA1755Q5JYT7 1200 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 VPS53Q5VIR6 699 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 NECAB2Q7Z6G3 386 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 CHURC1Q8WUH1 139 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 RUFY2Q8WXA3 655 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 MMP19Q99542 508 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.78□□□□□ -0.68
HDAC6-232ENST00000489053 TEX13BQ9BXU2 312 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 FBXO28Q9NVF7 368 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 ANAPC4Q9UJX5 808 aa10.78□□□□□ -0.68
HDAC6-232ENST00000489053 TMEM232C9JQI7 657 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 ORC4O43929 436 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 PCP11498 1178 aaKnown RBP10.77□□□□□ -0.69
HDAC6-232ENST00000489053 STAT2P52630 851 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 GRB14Q14449 540 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 IMMTQ16891 758 aaKnown RBP10.77□□□□□ -0.69
HDAC6-232ENST00000489053 SNRNP48Q6IEG0 339 aaKnown RBP10.77□□□□□ -0.69
HDAC6-232ENST00000489053 ZNF589Q86UQ0 364 aaPredicted RBP10.77□□□□□ -0.69
HDAC6-232ENST00000489053 RIOX2Q8IUF8 465 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 ABRAQ8N0Z2 381 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 CPXCR1Q8N123 301 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 GMCL1P1Q8NEA9 526 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 ESR2Q92731 530 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 MKL1Q969V6 931 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 CHMP4CQ96CF2 233 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 DDX11Q96FC9 970 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 PAK6Q9NQU5 681 aaPredicted RBP10.77□□□□□ -0.69
HDAC6-232ENST00000489053 ZMYM6O95789 1325 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 PLIN4Q96Q06 1357 aa10.77□□□□□ -0.69
HDAC6-232ENST00000489053 BRCA2P51587 3418 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 IGKV6D-41A0A0C4DH26 115 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 EVI5O60447 810 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 MSCO60682 206 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 MYCNP04198 464 aaPredicted RBP10.76□□□□□ -0.69
HDAC6-232ENST00000489053 NEFLP07196 543 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 FDX1P10109 184 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 CACNB2Q08289 660 aaPredicted RBP10.76□□□□□ -0.69
HDAC6-232ENST00000489053 TRIM32Q13049 653 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 TMEM132BQ14DG7 1078 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 CCL14Q16627 93 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 CCDC178Q5BJE1 867 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 AKNAD1Q5T1N1 836 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 TTC22Q5TAA0 569 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 FAM160B2Q86V87 743 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 ANKLE1Q8NAG6 615 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 USP6NLQ92738 828 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 SHISA4Q96DD7 197 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 NBPF3Q9H094 633 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 FBXO40Q9UH90 709 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.76□□□□□ -0.69
HDAC6-232ENST00000489053 MKI67P46013 3256 aaKnown RBP10.76□□□□□ -0.69
HDAC6-232ENST00000489053 MYH8P13535 1937 aa10.76□□□□□ -0.69
HDAC6-232ENST00000489053 CEP290O15078 2479 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms