RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 GPR153Q6NV75 609 aa22.12■■□□□ 1.13
HDAC6-231ENST00000488905 KANSL2Q9H9L4 492 aa22.12■■□□□ 1.13
HDAC6-231ENST00000488905 ECHDC1Q9NTX5 307 aa22.12■■□□□ 1.13
HDAC6-231ENST00000488905 TMEM132BQ14DG7 1078 aa22.11■■□□□ 1.13
HDAC6-231ENST00000488905 GOPCQ9HD26 462 aa22.11■■□□□ 1.13
HDAC6-231ENST00000488905 ROBO3Q96MS0 1386 aa22.11■■□□□ 1.13
HDAC6-231ENST00000488905 SEPT4O43236 478 aa22.1■■□□□ 1.13
HDAC6-231ENST00000488905 SLC25A27O95847 323 aa22.1■■□□□ 1.13
HDAC6-231ENST00000488905 ATN1P54259 1190 aaPredicted RBP22.1■■□□□ 1.13
HDAC6-231ENST00000488905 MDM2Q00987 491 aaPredicted RBP22.1■■□□□ 1.13
HDAC6-231ENST00000488905 MAML3Q96JK9 1138 aa22.1■■□□□ 1.13
HDAC6-231ENST00000488905 FBXO28Q9NVF7 368 aa22.1■■□□□ 1.13
HDAC6-231ENST00000488905 ADAMTS5Q9UNA0 930 aa22.1■■□□□ 1.13
HDAC6-231ENST00000488905 UNC80Q8N2C7 3258 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 FCER1AP12319 257 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 GJC2Q5T442 439 aaPredicted RBP22.09■■□□□ 1.13
HDAC6-231ENST00000488905 ANO1Q5XXA6 986 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 KBTBD3Q8NAB2 608 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 GPATCH3Q96I76 525 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 STRBPQ96SI9 672 aaKnown RBP22.09■■□□□ 1.13
HDAC6-231ENST00000488905 PPP1R9AQ9ULJ8 1098 aa22.09■■□□□ 1.13
HDAC6-231ENST00000488905 KBTBD13C9JR72 458 aa22.08■■□□□ 1.13
HDAC6-231ENST00000488905 RTP1P59025 263 aa22.08■■□□□ 1.13
HDAC6-231ENST00000488905 ARRDC4Q8NCT1 418 aa22.08■■□□□ 1.13
HDAC6-231ENST00000488905 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.08■■□□□ 1.13
HDAC6-231ENST00000488905 VWA5AO00534 786 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 RAD21O60216 631 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 SBK1Q52WX2 424 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 FAM83BQ5T0W9 1011 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 TSHZ3Q63HK5 1081 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 GIMAP6Q6P9H5 292 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 RIOX2Q8IUF8 465 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 APPBP2Q92624 585 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 MMP19Q99542 508 aa22.07■■□□□ 1.12
HDAC6-231ENST00000488905 GSG1L2A8MUP6 293 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 RASA1P20936 1047 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 PRAMEF19Q5SWL8 479 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 DEFB123Q8N688 67 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 REPS2Q8NFH8 660 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 OSBP2Q969R2 916 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 DCTPP1Q9H773 170 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 ZNF214Q9UL59 606 aaPredicted RBP22.06■■□□□ 1.12
HDAC6-231ENST00000488905 MCM3APO60318 1980 aa22.06■■□□□ 1.12
HDAC6-231ENST00000488905 EYSQ5T1H1 3165 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 COPB2P35606 906 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 FAM47AQ5JRC9 791 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 Q7L0L9 218 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 LBHD1Q9BQE6 289 aaPredicted RBP22.05■■□□□ 1.12
HDAC6-231ENST00000488905 EPB41L4AQ9HCS5 686 aaPredicted RBP22.05■■□□□ 1.12
HDAC6-231ENST00000488905 PRKAG2Q9UGJ0 569 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 NRBP1Q9UHY1 535 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 ATP11BQ9Y2G3 1177 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 CDH23Q9H251 3354 aa22.05■■□□□ 1.12
HDAC6-231ENST00000488905 GPAA1O43292 621 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 MYCNP04198 464 aaPredicted RBP22.04■■□□□ 1.12
HDAC6-231ENST00000488905 PGK2P07205 417 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 STAT3P40763 770 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 KCTD2Q14681 263 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 STK11IPQ8N1F8 1099 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 MKNK2Q9HBH9 465 aa22.04■■□□□ 1.12
HDAC6-231ENST00000488905 MINDY4BA8MYZ0 360 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 RNF113AO15541 343 aaKnown RBP22.03■■□□□ 1.12
HDAC6-231ENST00000488905 ZFYP08048 801 aaPredicted RBP22.03■■□□□ 1.12
HDAC6-231ENST00000488905 SNX17Q15036 470 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 LRRC41Q15345 812 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 SLC39A5Q6ZMH5 540 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 NUP88Q99567 741 aaPredicted RBP22.03■■□□□ 1.12
HDAC6-231ENST00000488905 SLF1Q9BQI6 1058 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 NYAP2Q9P242 653 aa22.03■■□□□ 1.12
HDAC6-231ENST00000488905 NDUFB10O96000 172 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 GNAT2P19087 354 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 TDO2P48775 406 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 ZNF792Q3KQV3 632 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 SLC17A8Q8NDX2 589 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 TINF2Q9BSI4 451 aa22.02■■□□□ 1.12
HDAC6-231ENST00000488905 DIS3Q9Y2L1 958 aaKnown RBP22.02■■□□□ 1.12
HDAC6-231ENST00000488905 M0R2C6 588 aa22.01■■□□□ 1.11
HDAC6-231ENST00000488905 RARBP10826 455 aa22.01■■□□□ 1.11
HDAC6-231ENST00000488905 TRIM60Q495X7 471 aa22.01■■□□□ 1.11
HDAC6-231ENST00000488905 TEX13BQ9BXU2 312 aa22.01■■□□□ 1.11
HDAC6-231ENST00000488905 XPNPEP3Q9NQH7 507 aa22.01■■□□□ 1.11
HDAC6-231ENST00000488905 PLIN4Q96Q06 1357 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 CUL9Q8IWT3 2517 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 IGKV6D-41A0A0C4DH26 115 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 F5H6K3 240 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 ADCYAP1R1P41586 468 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 KLRC3Q07444 240 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 SNRNP48Q6IEG0 339 aaKnown RBP22■■□□□ 1.11
HDAC6-231ENST00000488905 ZNF287Q9HBT7 754 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 PRDM5Q9NQX1 630 aaPredicted RBP22■■□□□ 1.11
HDAC6-231ENST00000488905 MTMR10Q9NXD2 777 aa22■■□□□ 1.11
HDAC6-231ENST00000488905 LRRFIP1Q32MZ4 808 aaKnown RBP21.99■■□□□ 1.11
HDAC6-231ENST00000488905 C1orf53Q5VUE5 145 aa21.99■■□□□ 1.11
HDAC6-231ENST00000488905 FERMT2Q96AC1 680 aa21.99■■□□□ 1.11
HDAC6-231ENST00000488905 PDLIM7Q9NR12 457 aa21.99■■□□□ 1.11
HDAC6-231ENST00000488905 STXBP5LQ9Y2K9 1186 aa21.99■■□□□ 1.11
HDAC6-231ENST00000488905 TTC41PQ6P2S7 1318 aa21.99■■□□□ 1.11
HDAC6-231ENST00000488905 PRDM1O75626 825 aa21.98■■□□□ 1.11
HDAC6-231ENST00000488905 APPP05067 770 aa21.98■■□□□ 1.11
HDAC6-231ENST00000488905 TAL1P17542 331 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms