RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 MAPK8IP1Q9UQF2 711 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 USP6P35125 1406 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 TRIM75PA6NK02 468 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 IFIT3O14879 490 aaKnown RBP6.96□□□□□ -1.3
VPS13D-209ENST00000487188 SKOR1P84550 965 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 GCKRQ14397 625 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 PPP1R7Q15435 360 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 PTGISQ16647 500 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 PNMA8AQ86V59 439 aaPredicted RBP6.96□□□□□ -1.3
VPS13D-209ENST00000487188 ABTB2Q8N961 1025 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 AENQ8WTP8 325 aaKnown RBP6.96□□□□□ -1.3
VPS13D-209ENST00000487188 NELFBQ8WX92 580 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 LRRC1Q9BTT6 524 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 CSRNP2Q9H175 543 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 HYOU1Q9Y4L1 999 aa6.96□□□□□ -1.3
VPS13D-209ENST00000487188 ANO9A1A5B4 782 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 ATP5J2-PTCD1G3V325 749 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 PTCD1O75127 700 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 SKAP2O75563 359 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 KRT14P02533 472 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 PTPREP23469 700 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 PPARAQ07869 468 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 RBBP5Q15291 538 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 EPHA10Q5JZY3 1008 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 LMBR1LQ6UX01 489 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 TRIM58Q8NG06 486 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MYCBPAPQ8TBZ2 947 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 SPDL1Q96EA4 605 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 SGSM3Q96HU1 749 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 ZIM3Q96PE6 472 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 PLCD4Q9BRC7 762 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 DDX21Q9NR30 783 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 NEURL1BA8MQ27 555 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MPHOSPH10O00566 681 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 AKR1B10O60218 316 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 FNTAP49354 379 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 EZH2Q15910 746 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 TTMPQ5BVD1 217 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.95□□□□□ -1.36e-7■■■■■ 28.5
VPS13D-209ENST00000487188 BLZF1Q9H2G9 400 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 CABP5Q9NP86 173 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 HPS5Q9UPZ3 1129 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC189A1A4V9 331 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 GCOM1H8Y6P7 765 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 FGAP02671 866 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 A1BGP04217 495 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 ZFYP08048 801 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MYZAPP0CAP1 466 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MTIF2P46199 727 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 GRIN1Q05586 938 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MYO1EQ12965 1108 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 PAPD7Q5XG87 772 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 KDM7AQ6ZMT4 941 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MB21D2Q8IYB1 491 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 CCDC47Q96A33 483 aaKnown RBP6.95□□□□□ -1.3
VPS13D-209ENST00000487188 KAZALD1Q96I82 304 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 MAP3K14Q99558 947 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 SH3GL2Q99962 352 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 CEP126Q9P2H0 1117 aa6.95□□□□□ -1.3
VPS13D-209ENST00000487188 METP08581 1390 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 FAM237AA0A1B0GTK4 181 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 B4E1Z4 1266 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 TCP1P17987 556 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CXCR5P32302 372 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PDE6BP35913 854 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 MDH1P40925 334 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 GUCY2DQ02846 1103 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PTPN12Q05209 780 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 HIBCHQ6NVY1 386 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 COPS6Q7L5N1 327 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 RNF217Q8TC41 542 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CALR3Q96L12 384 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 GSDMAQ96QA5 445 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 SH3GL3Q99963 347 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 ATP6V0A4Q9HBG4 840 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 RMND1Q9NWS8 449 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 DMGDHQ9UI17 866 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 NFU1Q9UMS0 254 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 EID1Q9Y6B2 187 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PTPRUQ92729 1446 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PALLDQ8WX93 1383 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 TTC26A0AVF1 554 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PLEKHG3A1L390 1219 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 HMGB1P1B2RPK0 211 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 FAM107AO95990 144 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CYP27A1Q02318 531 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 GKAP1Q5VSY0 366 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 APOA5Q6Q788 366 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 YTHDF3Q7Z739 585 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 TSEN2Q8NCE0 465 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 OSBP2Q969R2 916 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 SAAL1Q96ER3 474 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 CYFIP2Q96F07 1278 aa6.94□□□□□ -1.3
VPS13D-209ENST00000487188 DDX20Q9UHI6 824 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 FBXO2Q9UK22 296 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 TPX2Q9ULW0 747 aaKnown RBP6.94□□□□□ -1.3
VPS13D-209ENST00000487188 PCDHB6Q9Y5E3 794 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms