RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 STRNO43815 780 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 MYCP01106 439 aaPredicted RBP20.11■□□□□ 0.81
VIM-205ENST00000485947 DSG3P32926 999 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 ZNF589Q86UQ0 364 aaPredicted RBP20.11■□□□□ 0.81
VIM-205ENST00000485947 U2AF1L4Q8WU68 220 aaKnown RBP20.11■□□□□ 0.81
VIM-205ENST00000485947 UNC93B1Q9H1C4 597 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 PORCNQ9H237 461 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 A0A0C4DFX4 3053 aa20.11■□□□□ 0.81
VIM-205ENST00000485947 MYH8P13535 1937 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 SMIM22K7EJ46 135 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 ALX1Q15699 326 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 SEC62Q99442 399 aaKnown RBP20.1■□□□□ 0.81
VIM-205ENST00000485947 APBA2Q99767 749 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 DSCC1Q9BVC3 393 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.1■□□□□ 0.81
VIM-205ENST00000485947 HMX1Q9NP08 348 aaPredicted RBP20.1■□□□□ 0.81
VIM-205ENST00000485947 IVNS1ABPQ9Y6Y0 642 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 RANBP2P49792 3224 aaKnown RBP20.1■□□□□ 0.81
VIM-205ENST00000485947 DOCK3Q8IZD9 2030 aa20.1■□□□□ 0.81
VIM-205ENST00000485947 FLOT1O75955 427 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 HOXC6P09630 235 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 PTPREP23469 700 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 MAP2K5Q13163 448 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 MAP4K1Q92918 833 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 MKL1Q969V6 931 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 SHISA4Q96DD7 197 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 MROH8Q9H579 483 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 BTBD7Q9P203 1132 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 ADAMTS5Q9UNA0 930 aa20.09■□□□□ 0.81
VIM-205ENST00000485947 PLIN4Q96Q06 1357 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 IGKV6D-41A0A0C4DH26 115 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 CYP2B6P20813 491 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 COPB2P35606 906 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 ATP2B2Q01814 1243 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 PPARAQ07869 468 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 KIAA1755Q5JYT7 1200 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 MAP3K21Q5TCX8 1036 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 UBE2Q1Q7Z7E8 422 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 ABRAQ8N0Z2 381 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 ANKLE1Q8NAG6 615 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 NEDD1Q8NHV4 660 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 SPATC1LQ9H0A9 340 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 CRISPLD2Q9H0B8 497 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 ANAPC4Q9UJX5 808 aa20.08■□□□□ 0.81
VIM-205ENST00000485947 ZMYM6O95789 1325 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 CUL9Q8IWT3 2517 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 SLC25A27O95847 323 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 ZKSCAN1P17029 563 aaPredicted RBP20.07■□□□□ 0.8
VIM-205ENST00000485947 HSPA4P34932 840 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 ANP32AP39687 249 aaKnown RBP20.07■□□□□ 0.8
VIM-205ENST00000485947 ANAPC15P60006 121 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 PTH1RQ03431 593 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 GRB14Q14449 540 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 CCDC129Q6ZRS4 1044 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 CLEC10AQ8IUN9 316 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 SPICE1Q8N0Z3 855 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 TRIB2Q92519 343 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 HTATIP2Q9BUP3 242 aa20.07■□□□□ 0.8
VIM-205ENST00000485947 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.07■□□□□ 0.8
VIM-205ENST00000485947 U3KPZ7 1027 aaPredicted RBP20.07■□□□□ 0.8
VIM-205ENST00000485947 PEX10O60683 326 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 TTLL1O95922 423 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 IL17RAQ96F46 866 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 DEFB118Q96PH6 123 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 MOV10L1Q9BXT6 1211 aaKnown RBP20.06■□□□□ 0.8
VIM-205ENST00000485947 SLC5A4Q9NY91 659 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 MTMR4Q9NYA4 1195 aa20.06■□□□□ 0.8
VIM-205ENST00000485947 GREB1LQ9C091 1923 aaPredicted RBP20.06■□□□□ 0.8
VIM-205ENST00000485947 F5H6K3 240 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 TFRCP02786 760 aaKnown RBP20.05■□□□□ 0.8
VIM-205ENST00000485947 TSPY3P0CV98 308 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 TSPY8P0CW00 308 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 NT5C2P49902 561 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 KLRC3Q07444 240 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 GMCL1P1Q8NEA9 526 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 PPP1R9AQ9ULJ8 1098 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 RBM8AQ9Y5S9 174 aaKnown RBP20.05■□□□□ 0.8
VIM-205ENST00000485947 COL6A3P12111 3177 aa20.05■□□□□ 0.8
VIM-205ENST00000485947 DLL1O00548 723 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 FOXP2O15409 715 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 FARP2O94887 1054 aaPredicted RBP20.04■□□□□ 0.8
VIM-205ENST00000485947 FGRP09769 529 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 HSPD1P10809 573 aaKnown RBP20.04■□□□□ 0.8
VIM-205ENST00000485947 PCP11498 1178 aaKnown RBP20.04■□□□□ 0.8
VIM-205ENST00000485947 WDR78Q5VTH9 848 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 RNF20Q5VTR2 975 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 MFSD14CQ5VZR4 134 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 IL27Q8NEV9 243 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 ATG4CQ96DT6 458 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 CLIP2Q9UDT6 1046 aa20.04■□□□□ 0.8
VIM-205ENST00000485947 FDX1P10109 184 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 PRKAR2AP13861 404 aaKnown RBP20.03■□□□□ 0.8
VIM-205ENST00000485947 NECTIN1Q15223 517 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 PRPF38AQ8NAV1 312 aaKnown RBP20.03■□□□□ 0.8
VIM-205ENST00000485947 KCNB2Q92953 911 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 CEP95Q96GE4 821 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.03■□□□□ 0.8
VIM-205ENST00000485947 PLXNB2O15031 1838 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 LAMA4Q16363 1823 aa20.03■□□□□ 0.8
VIM-205ENST00000485947 A0A0G2JMZ2 1700 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms