RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SPATC1LQ9H0A9 340 aa19.71■□□□□ 0.75
TRIM54-203ENST00000485306 FOXP2O15409 715 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 PRDM1O75626 825 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 PRKAR2AP13861 404 aaKnown RBP19.7■□□□□ 0.74
TRIM54-203ENST00000485306 PPARAQ07869 468 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 TRIM32Q13049 653 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 NMIQ13287 307 aaPredicted RBP19.7■□□□□ 0.74
TRIM54-203ENST00000485306 MCMDC2Q4G0Z9 681 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 MOV10L1Q9BXT6 1211 aaKnown RBP19.7■□□□□ 0.74
TRIM54-203ENST00000485306 CRISPLD2Q9H0B8 497 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 CLIP2Q9UDT6 1046 aa19.7■□□□□ 0.74
TRIM54-203ENST00000485306 RLFQ13129 1914 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 TSPY3P0CV98 308 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 TSPY8P0CW00 308 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 SDSP20132 328 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 GRB14Q14449 540 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 VPS53Q5VIR6 699 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 MFSD14CQ5VZR4 134 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 UBE2Q1Q7Z7E8 422 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 DPP9Q86TI2 863 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 ATG4CQ96DT6 458 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 MROH8Q9H579 483 aa19.69■□□□□ 0.74
TRIM54-203ENST00000485306 GREB1LQ9C091 1923 aaPredicted RBP19.68■□□□□ 0.74
TRIM54-203ENST00000485306 F5H6K3 240 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 HIP1O00291 1037 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 SLC25A27O95847 323 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 HOXC6P09630 235 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 ERCC3P19447 782 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 KLRC3Q07444 240 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 CACNB2Q08289 660 aaPredicted RBP19.68■□□□□ 0.74
TRIM54-203ENST00000485306 CCL14Q16627 93 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 PPP4R3BQ5MIZ7 849 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 FAM83BQ5T0W9 1011 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 MAP3K21Q5TCX8 1036 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 NCAPG2Q86XI2 1143 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 ANKLE1Q8NAG6 615 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 MKL1Q969V6 931 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 SLC5A4Q9NY91 659 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 SYNPO2Q9UMS6 1093 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 ADAMTS5Q9UNA0 930 aa19.68■□□□□ 0.74
TRIM54-203ENST00000485306 MKI67P46013 3256 aaKnown RBP19.68■□□□□ 0.74
TRIM54-203ENST00000485306 IGKV6D-41A0A0C4DH26 115 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 TTLL1O95922 423 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 TFAP4Q01664 338 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 NEDD1Q8NHV4 660 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 CEP95Q96GE4 821 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 MTMR4Q9NYA4 1195 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 PPP1R9AQ9ULJ8 1098 aa19.67■□□□□ 0.74
TRIM54-203ENST00000485306 MYH4Q9Y623 1939 aa19.66■□□□□ 0.74
TRIM54-203ENST00000485306 MFAP1P55081 439 aaKnown RBP19.66■□□□□ 0.74
TRIM54-203ENST00000485306 ALX1Q15699 326 aa19.66■□□□□ 0.74
TRIM54-203ENST00000485306 NECAB2Q7Z6G3 386 aa19.66■□□□□ 0.74
TRIM54-203ENST00000485306 ZNF589Q86UQ0 364 aaPredicted RBP19.66■□□□□ 0.74
TRIM54-203ENST00000485306 FBXO28Q9NVF7 368 aa19.66■□□□□ 0.74
TRIM54-203ENST00000485306 RNF216Q9NWF9 866 aaPredicted RBP19.66■□□□□ 0.74
TRIM54-203ENST00000485306 A0A0G2JMZ2 1700 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 PARP14Q460N5 1801 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 VWA5AO00534 786 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 NDUFB10O96000 172 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 FCER1AP12319 257 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 ADORA2AP29274 412 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 COPB2P35606 906 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 TMEM132BQ14DG7 1078 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 FAM47AQ5JRC9 791 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 ABRAQ8N0Z2 381 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 PRPF38AQ8NAV1 312 aaKnown RBP19.65■□□□□ 0.74
TRIM54-203ENST00000485306 SLF1Q9BQI6 1058 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 DIAPH3Q9NSV4 1193 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 CTDP1Q9Y5B0 961 aaPredicted RBP19.65■□□□□ 0.74
TRIM54-203ENST00000485306 NR2E3Q9Y5X4 410 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 CCDC171Q6TFL3 1326 aa19.65■□□□□ 0.74
TRIM54-203ENST00000485306 TSPY2A6NKD2 308 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 HSPD1P10809 573 aaKnown RBP19.64■□□□□ 0.73
TRIM54-203ENST00000485306 STAT3P40763 770 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 CTDSPL2Q05D32 466 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 PAWRQ96IZ0 340 aaKnown RBP19.64■□□□□ 0.73
TRIM54-203ENST00000485306 ANAPC4Q9UJX5 808 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 OGDHLQ9ULD0 1010 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 PLIN4Q96Q06 1357 aa19.64■□□□□ 0.73
TRIM54-203ENST00000485306 CCND3P30281 292 aaPredicted RBP19.63■□□□□ 0.73
TRIM54-203ENST00000485306 CASC1Q6TDU7 716 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 RIOX2Q8IUF8 465 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 GMCL1P1Q8NEA9 526 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 NPLOC4Q8TAT6 608 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 NUP88Q99567 741 aaPredicted RBP19.63■□□□□ 0.73
TRIM54-203ENST00000485306 NBPF3Q9H094 633 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 FLRT1Q9NZU1 646 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 FEM1BQ9UK73 627 aa19.63■□□□□ 0.73
TRIM54-203ENST00000485306 COL11A1P12107 1806 aaPredicted RBP19.62■□□□□ 0.73
TRIM54-203ENST00000485306 ZMYM6O95789 1325 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 H0YGN5 161 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 RANBP6O60518 1105 aaKnown RBP19.62■□□□□ 0.73
TRIM54-203ENST00000485306 ZBED4O75132 1171 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 CDC45O75419 566 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 FGAP02671 866 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 CNGA1P29973 690 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 KCTD2Q14681 263 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 OLFML2BQ68BL8 750 aa19.62■□□□□ 0.73
TRIM54-203ENST00000485306 CWC27Q6UX04 472 aaKnown RBP19.62■□□□□ 0.73
TRIM54-203ENST00000485306 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms