RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 TICAM2Q86XR7 235 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 NAPBQ9H115 298 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 LTN1O94822 1766 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 ZNF532Q9HCE3 1301 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 PRDM1O75626 825 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 CXCR5P32302 372 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 RDXP35241 583 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 EARS2Q5JPH6 523 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 GIMAP7Q8NHV1 300 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 AATFQ9NY61 560 aaKnown RBP eCLIP21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 GDAQ9Y2T3 454 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 OPA1O60313 960 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 ADD2P35612 726 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 MMP14P50281 582 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 KRT83P78385 493 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 SGMS1Q86VZ5 419 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 LMO7Q8WWI1 1683 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 GOLGA8KD6RF30 607 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 DEXIO95424 95 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 ATP2B2Q01814 1243 aa21.04■□□□□ 0.96
CCDC88B-207ENST00000479965 HSF2BPO75031 334 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 KRT14P02533 472 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 IQCEQ6IPM2 695 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 WNT7AO00755 349 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 TRIM21P19474 475 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 WTAPQ15007 396 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 CNPY4Q8N129 248 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 TSEN2Q8NCE0 465 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 EHBP1Q8NDI1 1231 aa21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 AENQ8WTP8 325 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-207ENST00000479965 CCDC196A0A1B0GTZ2 297 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 METTL24Q5JXM2 366 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 B4GALNT4Q76KP1 1039 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 EHD2Q9NZN4 543 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 STK36Q9NRP7 1315 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 ERICH2A1L162 156 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 PARP1P09874 1014 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 TTMPQ5BVD1 217 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 AGPAT5Q9NUQ2 364 aa21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 ZNHIT6Q9NWK9 470 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-207ENST00000479965 CIAO1O76071 339 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 CCDC96Q2M329 555 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 WDR59Q6PJI9 974 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 SH3RF1Q7Z6J0 888 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 AMOTL1Q8IY63 956 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 CRACR2BQ8N4Y2 399 aaPredicted RBP21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 PRPF38AQ8NAV1 312 aaKnown RBP21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 PIH1D3Q9NQM4 214 aaKnown RBP21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 RWDD2AQ9UIY3 292 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 TBC1D2BQ9UPU7 963 aa21.02■□□□□ 0.95
CCDC88B-207ENST00000479965 PHKG2P15735 406 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 CYLC1P35663 651 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 CCDC181Q5TID7 509 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 C4AP0C0L4 1744 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 C4BP0C0L5 1744 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 XDHP47989 1333 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 LRRC10BA6NIK2 292 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 NBPF26B4DH59 902 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 LIFRP42702 1097 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 GUCY1A3Q02108 690 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 KIF5AQ12840 1032 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 NBPF10Q6P3W6 841 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 NBPF15Q8N660 670 aa21.01■□□□□ 0.95
CCDC88B-207ENST00000479965 MFSD6Q6ZSS7 791 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 MB21D1Q8N884 522 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 SH3GL2Q99962 352 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 MST1RQ04912 1400 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 MEFVO15553 781 aaPredicted RBP21■□□□□ 0.95
CCDC88B-207ENST00000479965 DNA2P51530 1060 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 CABP4P57796 275 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 KRT26Q7Z3Y9 468 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 DONSONQ9NYP3 566 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 TATP17735 454 aaPredicted RBP21■□□□□ 0.95
CCDC88B-207ENST00000479965 PRCPP42785 496 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 NNTQ13423 1086 aa21■□□□□ 0.95
CCDC88B-207ENST00000479965 NHEJ1Q9H9Q4 299 aaPredicted RBP21■□□□□ 0.95
CCDC88B-207ENST00000479965 SSBP05455 408 aaKnown RBP eCLIP20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 CSB-PGBD3P0DP91 1061 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 KLK7P49862 253 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 FAM89AQ96GI7 184 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 MARF1Q9Y4F3 1742 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 B4DLN1 442 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 APBA1Q02410 837 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 PTGDRQ13258 359 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 RASSF8Q8NHQ8 419 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 LRWD1Q9UFC0 647 aa20.99■□□□□ 0.95
CCDC88B-207ENST00000479965 WDR17Q8IZU2 1322 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 SEC24CP53992 1094 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 PDE6AP16499 860 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 ACTN3Q08043 901 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 SPATA4Q8NEY3 305 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 TRIM47Q96LD4 638 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 ZIM3Q96PE6 472 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 ARMT1Q9H993 441 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 TACC3Q9Y6A5 838 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 KDM6AO15550 1401 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 XBP1P17861 261 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 IFT88Q13099 833 aa20.98■□□□□ 0.95
CCDC88B-207ENST00000479965 TCIRG1Q13488 830 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms