RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 RIPK3Q9Y572 518 aa9.71□□□□□ -0.86
USP48-207ENST00000471752 RLFQ13129 1914 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 ALPK3Q96L96 1907 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 BAZ2AQ9UIF9 1905 aaKnown RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 IGKV6D-41A0A0C4DH26 115 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 RBAK-RBAKDNI3L0D1 243 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 GPAA1O43292 621 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 HOXC6P09630 235 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 CNGA1P29973 690 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 ATN1P54259 1190 aaPredicted RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 RRP1P56182 461 aaKnown RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 IRX5P78411 483 aaPredicted RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 FAM47AQ5JRC9 791 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 GJC2Q5T442 439 aaPredicted RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 VPS53Q5VIR6 699 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 NCAPG2Q86XI2 1143 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 IFNL3Q8IZI9 196 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 SOCS4Q8WXH5 440 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 GDF15Q99988 308 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 ADAMTS5Q9UNA0 930 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 NR2E3Q9Y5X4 410 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 DDX49Q9Y6V7 483 aaKnown RBP9.7□□□□□ -0.86
USP48-207ENST00000471752 SALL3Q9BXA9 1300 aa9.7□□□□□ -0.86
USP48-207ENST00000471752 VWA5AO00534 786 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 NMT2O60551 498 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 CYBAP13498 195 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 MAGEA10P43363 369 aaPredicted RBP9.69□□□□□ -0.86
USP48-207ENST00000471752 SNAP25P60880 206 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 CCNA1P78396 465 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 CTDSPL2Q05D32 466 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 SBK1Q52WX2 424 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 DPP9Q86TI2 863 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 NAV1Q8NEY1 1877 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 GTF3C2Q8WUA4 911 aaPredicted RBP9.69□□□□□ -0.86
USP48-207ENST00000471752 APPBP2Q92624 585 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 LENG1Q96BZ8 264 aaPredicted RBP9.69□□□□□ -0.86
USP48-207ENST00000471752 CWC22Q9HCG8 908 aaKnown RBP9.69□□□□□ -0.86
USP48-207ENST00000471752 CLIP2Q9UDT6 1046 aa9.69□□□□□ -0.86
USP48-207ENST00000471752 PATL2C9JE40 543 aaKnown RBP9.68□□□□□ -0.86
USP48-207ENST00000471752 F5H6K3 240 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 NDUFB10O96000 172 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 IGHDP01880 384 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 APPP05067 770 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 PTGS1P23219 599 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 SLC4A3P48751 1232 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 KLRC3Q07444 240 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 ZMYM1Q5SVZ6 1142 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 ANKRD45Q5TZF3 282 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 MFSD14CQ5VZR4 134 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 ZSCAN25Q6NSZ9 544 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 ANKLE1Q8NAG6 615 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 CCDC17Q96LX7 622 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 SENP6Q9GZR1 1112 aaPredicted RBP9.68□□□□□ -0.86
USP48-207ENST00000471752 CHMP4BQ9H444 224 aaKnown RBP9.68□□□□□ -0.86
USP48-207ENST00000471752 KANSL2Q9H9L4 492 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 ARHGEF10LQ9HCE6 1279 aa9.68□□□□□ -0.86
USP48-207ENST00000471752 DDX20Q9UHI6 824 aaKnown RBP9.68□□□□□ -0.86
USP48-207ENST00000471752 ZNF214Q9UL59 606 aaPredicted RBP9.68□□□□□ -0.86
USP48-207ENST00000471752 WDR46O15213 610 aaKnown RBP9.67□□□□□ -0.86
USP48-207ENST00000471752 STAT3P40763 770 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 MDM2Q00987 491 aaPredicted RBP9.67□□□□□ -0.86
USP48-207ENST00000471752 ZNF792Q3KQV3 632 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 Q7L0L9 218 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 LRRC47Q8N1G4 583 aaKnown RBP9.67□□□□□ -0.86
USP48-207ENST00000471752 FERMT2Q96AC1 680 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 CEP95Q96GE4 821 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 MAML3Q96JK9 1138 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 FAM227BQ96M60 508 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 MKNK2Q9HBH9 465 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 IL17RBQ9NRM6 502 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 PPP1R9AQ9ULJ8 1098 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 IVNS1ABPQ9Y6Y0 642 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 CUL9Q8IWT3 2517 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 EYSQ5T1H1 3165 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 PRUNE2Q8WUY3 3088 aa9.67□□□□□ -0.86
USP48-207ENST00000471752 CHD9Q3L8U1 2897 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 ADCY6O43306 1168 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 GLRX3O76003 335 aaKnown RBP9.66□□□□□ -0.86
USP48-207ENST00000471752 MX1P20591 662 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 TDO2P48775 406 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 TFAP4Q01664 338 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 TMEM63BQ5T3F8 832 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 SH3RF1Q7Z6J0 888 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 RIOX2Q8IUF8 465 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 TRMT44Q8IYL2 757 aaKnown RBP9.66□□□□□ -0.86
USP48-207ENST00000471752 CPXCR1Q8N123 301 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 SHCBP1Q8NEM2 672 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 LPAR1Q92633 364 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 FGD4Q96M96 766 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 FSD1Q9BTV5 496 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 RAVER2Q9HCJ3 691 aaKnown RBP9.66□□□□□ -0.86
USP48-207ENST00000471752 MTMR4Q9NYA4 1195 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 NYAP2Q9P242 653 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 ARPP21Q9UBL0 812 aaPredicted RBP9.66□□□□□ -0.86
USP48-207ENST00000471752 UNC80Q8N2C7 3258 aa9.66□□□□□ -0.86
USP48-207ENST00000471752 A0A0D9SFI3 127 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 STRNO43815 780 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 SNAI1O95863 264 aaPredicted RBP9.65□□□□□ -0.86
USP48-207ENST00000471752 PGK1P00558 417 aa9.65□□□□□ -0.86
USP48-207ENST00000471752 ZNF865P0CJ78 1059 aaPredicted RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms