RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 KCTD2Q14681 263 aa20.89■□□□□ 0.93
COL7A1-206ENST00000466591 STAP2Q9UGK3 403 aa20.89■□□□□ 0.93
COL7A1-206ENST00000466591 PATL2C9JE40 543 aaKnown RBP20.88■□□□□ 0.93
COL7A1-206ENST00000466591 PRDM1O75626 825 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 TSPY3P0CV98 308 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 TSPY8P0CW00 308 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 COPB2P35606 906 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 SIAH1Q8IUQ4 282 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 CRBNQ96SW2 442 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 FBXO28Q9NVF7 368 aa20.88■□□□□ 0.93
COL7A1-206ENST00000466591 SYN1P17600 705 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 RASA1P20936 1047 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 TMEM132BQ14DG7 1078 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 OLFML2BQ68BL8 750 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 IFNL3Q8IZI9 196 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 SLF1Q9BQI6 1058 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 SENP6Q9GZR1 1112 aaPredicted RBP20.87■□□□□ 0.93
COL7A1-206ENST00000466591 CLIP2Q9UDT6 1046 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 PPP1R9AQ9ULJ8 1098 aa20.87■□□□□ 0.93
COL7A1-206ENST00000466591 STAT3P40763 770 aa20.86■□□□□ 0.93
COL7A1-206ENST00000466591 LHX8Q68G74 356 aa20.86■□□□□ 0.93
COL7A1-206ENST00000466591 ABRAQ8N0Z2 381 aa20.86■□□□□ 0.93
COL7A1-206ENST00000466591 OTUD7AQ8TE49 926 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-206ENST00000466591 NUP88Q99567 741 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-206ENST00000466591 PRKAG2Q9UGJ0 569 aa20.86■□□□□ 0.93
COL7A1-206ENST00000466591 ROBO3Q96MS0 1386 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 KBTBD13C9JR72 458 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 F5H6K3 240 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 VWA5AO00534 786 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 KLRC3Q07444 240 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 IKQ13123 557 aaPredicted RBP20.85■□□□□ 0.93
COL7A1-206ENST00000466591 ARRDC4Q8NCT1 418 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 PI4K2BQ8TCG2 481 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 SEC62Q99442 399 aaKnown RBP20.85■□□□□ 0.93
COL7A1-206ENST00000466591 EPB41L4AQ9HCS5 686 aaPredicted RBP20.85■□□□□ 0.93
COL7A1-206ENST00000466591 NYAP2Q9P242 653 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 CEP290O15078 2479 aa20.85■□□□□ 0.93
COL7A1-206ENST00000466591 A0A0G2JMZ2 1700 aa20.84■□□□□ 0.93
COL7A1-206ENST00000466591 A0A1W2PPC1 479 aa20.84■□□□□ 0.93
COL7A1-206ENST00000466591 ZBED4O75132 1171 aa20.84■□□□□ 0.93
COL7A1-206ENST00000466591 ANO1Q5XXA6 986 aa20.84■□□□□ 0.93
COL7A1-206ENST00000466591 RIOX2Q8IUF8 465 aa20.84■□□□□ 0.93
COL7A1-206ENST00000466591 PFASO15067 1338 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 DNM1LO00429 736 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 COBLO75128 1261 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 TTLL1O95922 423 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 NDUFB10O96000 172 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 CYBAP13498 195 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 MNX1P50219 401 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-206ENST00000466591 PPARAQ07869 468 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 SNRNP48Q6IEG0 339 aaKnown RBP20.83■□□□□ 0.93
COL7A1-206ENST00000466591 CPXCR1Q8N123 301 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 LRRC47Q8N1G4 583 aaKnown RBP20.83■□□□□ 0.93
COL7A1-206ENST00000466591 KIFC2Q96AC6 838 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 DDX11Q96FC9 970 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 LBHD1Q9BQE6 289 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-206ENST00000466591 TEX13BQ9BXU2 312 aa20.83■□□□□ 0.93
COL7A1-206ENST00000466591 PGK2P07205 417 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 ATN1P54259 1190 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-206ENST00000466591 PPP4R3BQ5MIZ7 849 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 ZMYM1Q5SVZ6 1142 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 PRPF38AQ8NAV1 312 aaKnown RBP20.82■□□□□ 0.92
COL7A1-206ENST00000466591 EVI5LQ96CN4 794 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 CEP95Q96GE4 821 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 MAML3Q96JK9 1138 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.82■□□□□ 0.92
COL7A1-206ENST00000466591 TOMM22Q9NS69 142 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 ZNF236Q9UL36 1845 aa20.82■□□□□ 0.92
COL7A1-206ENST00000466591 SEPT4O43236 478 aa20.81■□□□□ 0.92
COL7A1-206ENST00000466591 TFAP4Q01664 338 aa20.81■□□□□ 0.92
COL7A1-206ENST00000466591 LRRC26Q2I0M4 334 aa20.81■□□□□ 0.92
COL7A1-206ENST00000466591 FAM47AQ5JRC9 791 aa20.81■□□□□ 0.92
COL7A1-206ENST00000466591 GJC2Q5T442 439 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-206ENST00000466591 UBE2OQ9C0C9 1292 aaKnown RBP20.81■□□□□ 0.92
COL7A1-206ENST00000466591 CNPY2Q9Y2B0 182 aa20.81■□□□□ 0.92
COL7A1-206ENST00000466591 TSPY2A6NKD2 308 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 TRIM6-TRIM34B2RNG4 842 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 RARBP10826 455 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 COL6A1P12109 1028 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 PRAMEF19Q5SWL8 479 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 TRPV1Q8NER1 839 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 MTMR4Q9NYA4 1195 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 FEM1BQ9UK73 627 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 ADAMTS5Q9UNA0 930 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 STX8Q9UNK0 236 aa20.8■□□□□ 0.92
COL7A1-206ENST00000466591 ALPK3Q96L96 1907 aa20.79■□□□□ 0.92
COL7A1-206ENST00000466591 MAGEA10P43363 369 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-206ENST00000466591 SLFN13Q68D06 897 aa20.79■□□□□ 0.92
COL7A1-206ENST00000466591 CCDC129Q6ZRS4 1044 aa20.79■□□□□ 0.92
COL7A1-206ENST00000466591 CHMP4CQ96CF2 233 aa20.79■□□□□ 0.92
COL7A1-206ENST00000466591 ZNF214Q9UL59 606 aaPredicted RBP20.79■□□□□ 0.92
COL7A1-206ENST00000466591 RLFQ13129 1914 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 RANBP6O60518 1105 aaKnown RBP20.78■□□□□ 0.92
COL7A1-206ENST00000466591 BMP3P12645 472 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 HDAC1Q13547 482 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-206ENST00000466591 ANKRD35Q8N283 1001 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 NEDD1Q8NHV4 660 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 TINF2Q9BSI4 451 aa20.78■□□□□ 0.92
COL7A1-206ENST00000466591 RWDD1Q9H446 243 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-206ENST00000466591 SYNPO2Q9UMS6 1093 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms