RNA–Protein interactions for RNA: ENST00000462787.5

SMC4-204, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2 BASIC

Gene SMC4, Length 5,033 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-204ENST00000462787 AKNAD1Q5T1N1 836 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 CCDC105Q8IYK2 499 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 TRIM4Q9C037 500 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 NLRC4Q9NPP4 1024 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 VPS54Q9P1Q0 977 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 IQSEC3Q9UPP2 1182 aaPredicted RBP17.47■□□□□ 0.39
SMC4-204ENST00000462787 FRMD4BQ9Y2L6 1034 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 CPSF1Q10570 1443 aaKnown RBP17.47■□□□□ 0.39
SMC4-204ENST00000462787 HMGB1P1B2RPK0 211 aaPredicted RBP17.47■□□□□ 0.39
SMC4-204ENST00000462787 HEXIM1O94992 359 aaKnown RBP17.47■□□□□ 0.39
SMC4-204ENST00000462787 GJC1P36383 396 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 ZNF790Q6PG37 636 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 CCHCR1Q8TD31 782 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 DCAF5Q96JK2 942 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 PSD3Q9NYI0 1048 aa17.47■□□□□ 0.39
SMC4-204ENST00000462787 ARHGAP31Q2M1Z3 1444 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 ZBTB22O15209 634 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 WHAMMQ8TF30 809 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 LARSQ9P2J5 1176 aaKnown RBP17.46■□□□□ 0.39
SMC4-204ENST00000462787 ANAPC4Q9UJX5 808 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 MRFAP1Q9Y605 127 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 ARID4AP29374 1257 aaPredicted RBP17.46■□□□□ 0.39
SMC4-204ENST00000462787 SF3A3Q12874 501 aaKnown RBP eCLIP17.46■□□□□ 0.393e-7■■■■■ 122.4
SMC4-204ENST00000462787 NEURL1BA8MQ27 555 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 BUB1O43683 1085 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 FOXP1Q9H334 677 aaPredicted RBP17.46■□□□□ 0.39
SMC4-204ENST00000462787 MCM9Q9NXL9 1143 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 SMIM24O75264 130 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 NDUFA10O95299 355 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 MAIP1Q8WWC4 291 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 EPB41L5Q9HCM4 733 aa17.46■□□□□ 0.39
SMC4-204ENST00000462787 HLA-DOAP06340 250 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 NCAPH2Q6IBW4 605 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 ANKRD42Q8N9B4 389 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 TCP11Q8WWU5 503 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 BICD1Q96G01 975 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 KRT12Q99456 494 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 TMOD2Q9NZR1 351 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 CTTNBP2NLQ9P2B4 639 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 LRWD1Q9UFC0 647 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 PRDM4Q9UKN5 801 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 ANKRD65E5RJM6 399 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 IRS4O14654 1257 aaPredicted RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 CCNT1O60563 726 aaKnown RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 ZAP70P43403 619 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 C2orf54Q08AI8 447 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 NONOQ15233 471 aaKnown RBP eCLIP17.45■□□□□ 0.382e-8■■■■■ 98.1
SMC4-204ENST00000462787 NBPF9Q3BBW0 867 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 MGARPQ8TDB4 240 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 FAM114A2Q9NRY5 505 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 MFAP3LO75121 409 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 ANKRD20A3Q5VUR7 823 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 ZNF654Q8IZM8 581 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 INTS9Q9NV88 658 aaKnown RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 NCKAP5LQ9HCH0 1330 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 NDC80O14777 642 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 SEMA3EO15041 775 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 TROVE2P10155 538 aaKnown RBP eCLIP17.45■□□□□ 0.381e-12■■■■■ 61.2
SMC4-204ENST00000462787 CTDSPL2Q05D32 466 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 TOGARAM2Q6ZUX3 1019 aa17.45■□□□□ 0.38
SMC4-204ENST00000462787 ZNF589Q86UQ0 364 aaPredicted RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 RNF168Q8IYW5 571 aaPredicted RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 SYMPKQ92797 1274 aaKnown RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 SAMSN1Q9NSI8 373 aaKnown RBP17.45■□□□□ 0.38
SMC4-204ENST00000462787 ST5P78524 1137 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 LGR6Q9HBX8 967 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 PTPN21Q16825 1174 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 KIFAP3Q92845 792 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 LSM14BQ9BX40 385 aaKnown RBP17.44■□□□□ 0.38
SMC4-204ENST00000462787 PARP1P09874 1014 aaKnown RBP17.44■□□□□ 0.38
SMC4-204ENST00000462787 POLA2Q14181 598 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 PUM3Q15397 648 aaKnown RBP17.44■□□□□ 0.38
SMC4-204ENST00000462787 DHX40Q8IX18 779 aaKnown RBP17.44■□□□□ 0.38
SMC4-204ENST00000462787 COPRSQ9NQ92 184 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 ST7Q9NRC1 585 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 ZMYM1Q5SVZ6 1142 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 TUBGCP2Q9BSJ2 902 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 ZNF532Q9HCE3 1301 aa17.44■□□□□ 0.38
SMC4-204ENST00000462787 FGAP02671 866 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 CCZ1BP86790 482 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 CCZ1P86791 482 aaPredicted RBP17.43■□□□□ 0.38
SMC4-204ENST00000462787 TXKP42681 527 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 HINFPQ9BQA5 517 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.43■□□□□ 0.38
SMC4-204ENST00000462787 GAS8O95995 478 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 FMR1NBQ8N0W7 255 aaPredicted RBP17.43■□□□□ 0.38
SMC4-204ENST00000462787 HELBQ8NG08 1087 aaPredicted RBP17.43■□□□□ 0.38
SMC4-204ENST00000462787 MAGEF1Q9HAY2 307 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 KRT15P19012 456 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 LONP1P36776 959 aaKnown RBP17.43■□□□□ 0.38
SMC4-204ENST00000462787 FANCBQ8NB91 859 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 CFAP57Q96MR6 1250 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 RWDD2AQ9UIY3 292 aa17.43■□□□□ 0.38
SMC4-204ENST00000462787 TNRQ92752 1358 aa17.42■□□□□ 0.38
SMC4-204ENST00000462787 GLE1Q53GS7 698 aaKnown RBP17.42■□□□□ 0.38
SMC4-204ENST00000462787 HAUS3Q68CZ6 603 aa17.42■□□□□ 0.38
SMC4-204ENST00000462787 HIBCHQ6NVY1 386 aaPredicted RBP17.42■□□□□ 0.38
SMC4-204ENST00000462787 PAF1Q8N7H5 531 aa17.42■□□□□ 0.38
SMC4-204ENST00000462787 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
SMC4-204ENST00000462787 TRIM6Q9C030 488 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms