RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 USP6NLQ92738 828 aa22.01■■□□□ 1.11
HOXD3-204ENST00000459979 NYAP2Q9P242 653 aa22.01■■□□□ 1.11
HOXD3-204ENST00000459979 RABGAP1Q9Y3P9 1069 aa22.01■■□□□ 1.11
HOXD3-204ENST00000459979 CCDC171Q6TFL3 1326 aa22.01■■□□□ 1.11
HOXD3-204ENST00000459979 RLFQ13129 1914 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 A0A1W2PPC1 479 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 HSPD1P10809 573 aaKnown RBP22■■□□□ 1.11
HOXD3-204ENST00000459979 XRCC5P13010 732 aaKnown RBP22■■□□□ 1.11
HOXD3-204ENST00000459979 CCND3P30281 292 aaPredicted RBP22■■□□□ 1.11
HOXD3-204ENST00000459979 MFAP1P55081 439 aaKnown RBP22■■□□□ 1.11
HOXD3-204ENST00000459979 KIAA1755Q5JYT7 1200 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 MORN1Q5T089 497 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 TTC22Q5TAA0 569 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 PLEKHH3Q7Z736 793 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 GDF15Q99988 308 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22■■□□□ 1.11
HOXD3-204ENST00000459979 PFASO15067 1338 aa22■■□□□ 1.11
HOXD3-204ENST00000459979 PLIN4Q96Q06 1357 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 PRDM1O75626 825 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 CNMDO75829 334 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 FGAP02671 866 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 FGRP09769 529 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 RGS2P41220 211 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 COG2Q14746 738 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 STK11IPQ8N1F8 1099 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 NEDD1Q8NHV4 660 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 MKL1Q969V6 931 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 CWC22Q9HCG8 908 aaKnown RBP21.99■■□□□ 1.11
HOXD3-204ENST00000459979 HOXC10Q9NYD6 342 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 SYNPO2Q9UMS6 1093 aa21.99■■□□□ 1.11
HOXD3-204ENST00000459979 SPDYE16A6NNV3 312 aaPredicted RBP21.98■■□□□ 1.11
HOXD3-204ENST00000459979 WDR46O15213 610 aaKnown RBP21.98■■□□□ 1.11
HOXD3-204ENST00000459979 GSPT1P15170 499 aaKnown RBP21.98■■□□□ 1.11
HOXD3-204ENST00000459979 WDR78Q5VTH9 848 aa21.98■■□□□ 1.11
HOXD3-204ENST00000459979 APBA2Q99767 749 aa21.98■■□□□ 1.11
HOXD3-204ENST00000459979 DIAPH3Q9NSV4 1193 aa21.98■■□□□ 1.11
HOXD3-204ENST00000459979 GOPCQ9HD26 462 aa21.97■■□□□ 1.11
HOXD3-204ENST00000459979 MTMR4Q9NYA4 1195 aa21.97■■□□□ 1.11
HOXD3-204ENST00000459979 ORC4O43929 436 aa21.96■■□□□ 1.11
HOXD3-204ENST00000459979 MAGEA10P43363 369 aaPredicted RBP21.96■■□□□ 1.11
HOXD3-204ENST00000459979 ATP2B2Q01814 1243 aa21.96■■□□□ 1.11
HOXD3-204ENST00000459979 CWC27Q6UX04 472 aaKnown RBP21.96■■□□□ 1.11
HOXD3-204ENST00000459979 TRMT44Q8IYL2 757 aaKnown RBP21.96■■□□□ 1.11
HOXD3-204ENST00000459979 PARP14Q460N5 1801 aa21.96■■□□□ 1.11
HOXD3-204ENST00000459979 MYH4Q9Y623 1939 aa21.96■■□□□ 1.11
HOXD3-204ENST00000459979 TSPY3P0CV98 308 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 TSPY8P0CW00 308 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 DSG3P32926 999 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 CCNA1P78396 465 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 TFAP4Q01664 338 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 CTDSPL2Q05D32 466 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 MAP2K5Q13163 448 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 LHX8Q68G74 356 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 SPICE1Q8N0Z3 855 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 CEP95Q96GE4 821 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 TANGO6Q9C0B7 1094 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 FLRT1Q9NZU1 646 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 BTBD7Q9P203 1132 aa21.95■■□□□ 1.1
HOXD3-204ENST00000459979 A0A0G2JMZ2 1700 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 TTLL1O95922 423 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 PCP11498 1178 aaKnown RBP21.94■■□□□ 1.1
HOXD3-204ENST00000459979 BMP8BP34820 402 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 PPP4R3BQ5MIZ7 849 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 CENPQQ7L2Z9 268 aaPredicted RBP21.94■■□□□ 1.1
HOXD3-204ENST00000459979 MB21D1Q8N884 522 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 ADAMTS5Q9UNA0 930 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 TACC3Q9Y6A5 838 aa21.94■■□□□ 1.1
HOXD3-204ENST00000459979 F5H6K3 240 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 COL6A1P12109 1028 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 KLRC3Q07444 240 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 LAMA3Q16787 3333 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 FAM47AQ5JRC9 791 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 CLIP2Q9UDT6 1046 aa21.93■■□□□ 1.1
HOXD3-204ENST00000459979 FLOT1O75955 427 aa21.92■■□□□ 1.1
HOXD3-204ENST00000459979 NOVP48745 357 aa21.92■■□□□ 1.1
HOXD3-204ENST00000459979 LRRC26Q2I0M4 334 aa21.92■■□□□ 1.1
HOXD3-204ENST00000459979 DSCC1Q9BVC3 393 aa21.92■■□□□ 1.1
HOXD3-204ENST00000459979 INCENPQ9NQS7 918 aa21.92■■□□□ 1.1
HOXD3-204ENST00000459979 PTPREP23469 700 aa21.91■■□□□ 1.1
HOXD3-204ENST00000459979 NT5C2P49902 561 aa21.91■■□□□ 1.1
HOXD3-204ENST00000459979 GMCL1P1Q8NEA9 526 aa21.91■■□□□ 1.1
HOXD3-204ENST00000459979 NPLOC4Q8TAT6 608 aa21.91■■□□□ 1.1
HOXD3-204ENST00000459979 IL17RBQ9NRM6 502 aa21.91■■□□□ 1.1
HOXD3-204ENST00000459979 RAD50Q92878 1312 aa21.9■■□□□ 1.1
HOXD3-204ENST00000459979 SLC15A5A6NIM6 579 aa21.9■■□□□ 1.1
HOXD3-204ENST00000459979 TSPY2A6NKD2 308 aa21.9■■□□□ 1.1
HOXD3-204ENST00000459979 NDUFB10O96000 172 aa21.9■■□□□ 1.1
HOXD3-204ENST00000459979 MFSD14CQ5VZR4 134 aa21.9■■□□□ 1.1
HOXD3-204ENST00000459979 UBE2OQ9C0C9 1292 aaKnown RBP21.9■■□□□ 1.1
HOXD3-204ENST00000459979 CHMLP26374 656 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 FAM83BQ5T0W9 1011 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 AKNAD1Q5T1N1 836 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 Q7L0L9 218 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 SLC17A8Q8NDX2 589 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 SHCBP1Q8NEM2 672 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 STAG1Q8WVM7 1258 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 ATG4CQ96DT6 458 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 SPATC1LQ9H0A9 340 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 TCP11L1Q9NUJ3 509 aa21.89■■□□□ 1.09
HOXD3-204ENST00000459979 PPP1R9AQ9ULJ8 1098 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms