RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZYXQ15942 572 aaKnown RBP12.82□□□□□ -0.36
SCN9A-205ENST00000454569 CCDC178Q5BJE1 867 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 CATIPQ7Z7H3 387 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 SCYL3Q8IZE3 742 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 PHKBQ93100 1093 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 DDX11Q96FC9 970 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 SNCAIPQ9Y6H5 919 aa12.82□□□□□ -0.36
SCN9A-205ENST00000454569 hCG_1642624A0A1W2PR95 340 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 DDAH1O94760 285 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 ASNSP08243 561 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 PDHBP11177 359 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 MAP3K9P80192 1104 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 PKP1Q13835 747 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 GRM4Q14833 912 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 CST9Q5W186 159 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 TTBK2Q6IQ55 1244 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 SRBD1Q8N5C6 995 aaKnown RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 NUP88Q99567 741 aaPredicted RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 GPBP1L1Q9HC44 474 aaPredicted RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 WDR70Q9NW82 654 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 RLFQ13129 1914 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 FRMPD2Q68DX3 1309 aaPredicted RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 TCHHQ07283 1943 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 PALM3A6NDB9 673 aaPredicted RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 SNHG28P0DPA3 235 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 GJB2P29033 226 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 RTN1Q16799 776 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 NOL9Q5SY16 702 aaKnown RBP12.81□□□□□ -0.36
SCN9A-205ENST00000454569 SYNE3Q6ZMZ3 975 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 SPICE1Q8N0Z3 855 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 SMARCC2Q8TAQ2 1214 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 HOOK2Q96ED9 719 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 AIFM3Q96NN9 605 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 TMX2Q9Y320 296 aa12.81□□□□□ -0.36
SCN9A-205ENST00000454569 PTPDC1A2A3K4 754 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 F5H6K3 240 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 CYTH3O43739 400 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 RAD21O60216 631 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 PPP1R12BO60237 982 aaPredicted RBP12.8□□□□□ -0.36
SCN9A-205ENST00000454569 NDUFB10O96000 172 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 HSP90AA1P07900 732 aaKnown RBP12.8□□□□□ -0.36
SCN9A-205ENST00000454569 KLRC3Q07444 240 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 SPP2Q13103 211 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 TTLL12Q14166 644 aaPredicted RBP12.8□□□□□ -0.36
SCN9A-205ENST00000454569 MAP3K11Q16584 847 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 KCTD1Q719H9 257 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 INTS4Q96HW7 963 aaKnown RBP12.8□□□□□ -0.36
SCN9A-205ENST00000454569 UBA5Q9GZZ9 404 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 ELP3Q9H9T3 547 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 GPCPD1Q9NPB8 672 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 GJB4Q9NTQ9 266 aa12.8□□□□□ -0.36
SCN9A-205ENST00000454569 COL11A1P12107 1806 aaPredicted RBP12.79□□□□□ -0.36
SCN9A-205ENST00000454569 CELF2O95319 508 aaKnown RBP12.79□□□□□ -0.36
SCN9A-205ENST00000454569 LDLRAD1Q5T700 205 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 SLFN13Q68D06 897 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 TMTC3Q6ZXV5 915 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 PIBF1Q8WXW3 757 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 SHISA4Q96DD7 197 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 ZHX2Q9Y6X8 837 aa12.79□□□□□ -0.36
SCN9A-205ENST00000454569 CNTNAP5Q8WYK1 1306 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 KLRF2D3W0D1 207 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 NF2P35240 595 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 SLC16A2P36021 539 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 GJA5P36382 358 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 FOSBP53539 338 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 RCAN1P53805 252 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 ZNF543Q08ER8 600 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 ARHGEF10LQ9HCE6 1279 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 EMILIN3Q9NT22 766 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 SMC3Q9UQE7 1217 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 ZDHHC9Q9Y397 364 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 AFG3L2Q9Y4W6 797 aa12.78□□□□□ -0.36
SCN9A-205ENST00000454569 TRIM75PA6NK02 468 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 PARP1P09874 1014 aaKnown RBP12.77□□□□□ -0.36
SCN9A-205ENST00000454569 CALM1P0DP23 149 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 CALM2P0DP24 149 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 CALM3P0DP25 149 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 IFNAR1P17181 557 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 IREB2P48200 963 aaKnown RBP12.77□□□□□ -0.36
SCN9A-205ENST00000454569 MTMR2Q13614 643 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 PKN1Q16512 942 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 OTUD7BQ6GQQ9 843 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 GMCL1P1Q8NEA9 526 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 CTCFLQ8NI51 663 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-205ENST00000454569 MAP3K14Q99558 947 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 LLPHQ9BRT6 129 aaKnown RBP12.77□□□□□ -0.36
SCN9A-205ENST00000454569 WDR18Q9BV38 432 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 SLC26A6Q9BXS9 759 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 PICK1Q9NRD5 415 aa12.77□□□□□ -0.36
SCN9A-205ENST00000454569 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.77□□□□□ -0.36
SCN9A-205ENST00000454569 PASKQ96RG2 1323 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 CPLX1O14810 134 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 SNAP25P60880 206 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 FAM83BQ5T0W9 1011 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 ARMC9Q7Z3E5 817 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 ANKRD13AQ8IZ07 590 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 ZNF784Q8NCA9 323 aaPredicted RBP12.77□□□□□ -0.37
SCN9A-205ENST00000454569 ZNF280CQ8ND82 737 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 VCPKMTQ9H867 229 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 GBA2Q9HCG7 927 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms