RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 SLC1A4P43007 532 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 MAP2K1Q02750 393 aaPredicted RBP13.92□□□□□ -0.18
LINC00339-205ENST00000452322 USP17L24Q0WX57 530 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 NFXL1Q6ZNB6 911 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 CATIPQ7Z7H3 387 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 PNMA3Q9UL41 463 aa13.92□□□□□ -0.18
LINC00339-205ENST00000452322 DDAH1O94760 285 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 BMP3P12645 472 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 OSBPP22059 807 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 CACNB1Q02641 598 aaPredicted RBP13.91□□□□□ -0.18
LINC00339-205ENST00000452322 TROAPQ12815 778 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 FAM83BQ5T0W9 1011 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 CATSPERGQ6ZRH7 1159 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 ZNF654Q8IZM8 581 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 BRF1Q92994 677 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 PARK7Q99497 189 aaKnown RBP13.91□□□□□ -0.18
LINC00339-205ENST00000452322 NUP88Q99567 741 aaPredicted RBP13.91□□□□□ -0.18
LINC00339-205ENST00000452322 TANGO6Q9C0B7 1094 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 ALDH8A1Q9H2A2 487 aaPredicted RBP13.91□□□□□ -0.18
LINC00339-205ENST00000452322 MTMR7Q9Y216 660 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 SLC12A7Q9Y666 1083 aa13.91□□□□□ -0.18
LINC00339-205ENST00000452322 MYPNQ86TC9 1320 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 IRX3P78415 501 aaPredicted RBP13.9□□□□□ -0.18
LINC00339-205ENST00000452322 ZNF543Q08ER8 600 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 RABEP1Q15276 862 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 TAF1CQ15572 869 aaPredicted RBP13.9□□□□□ -0.18
LINC00339-205ENST00000452322 GPATCH4Q5T3I0 446 aaKnown RBP13.9□□□□□ -0.18
LINC00339-205ENST00000452322 RASGRP2Q7LDG7 609 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 JMYQ8N9B5 988 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 IL27Q8NEV9 243 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 MAP3K14Q99558 947 aa13.9□□□□□ -0.18
LINC00339-205ENST00000452322 ASCC2Q9H1I8 757 aaPredicted RBP13.9□□□□□ -0.18
LINC00339-205ENST00000452322 CA12O43570 354 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 PLA2G6O60733 806 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 CALM1P0DP23 149 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 CALM2P0DP24 149 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 CALM3P0DP25 149 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 NEK4P51957 841 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 RCAN1P53805 252 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 EVCP57679 992 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 TOB2Q14106 344 aaPredicted RBP13.89□□□□□ -0.19
LINC00339-205ENST00000452322 GRM4Q14833 912 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 ANKRD1Q15327 319 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 CCDC96Q2M329 555 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 ASPRV1Q53RT3 343 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 APOA5Q6Q788 366 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 SYNE3Q6ZMZ3 975 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 KCTD1Q719H9 257 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 CFHR5Q9BXR6 569 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 SAGE1Q9NXZ1 904 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 FEM1BQ9UK73 627 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 PARP14Q460N5 1801 aa13.89□□□□□ -0.19
LINC00339-205ENST00000452322 KLF18A0A0U1RQI7 1052 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 TMEM232C9JQI7 657 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 FLOT1O75955 427 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 PARP1P09874 1014 aaKnown RBP13.88□□□□□ -0.19
LINC00339-205ENST00000452322 CYP2C8P10632 490 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 STAT2P52630 851 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 AK2P54819 239 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 HERVK_113P62684 666 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 APOBRQ0VD83 1088 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 COG2Q14746 738 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 LBX2Q6XYB7 198 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 FAM160B2Q86V87 743 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 GTF3C2Q8WUA4 911 aaPredicted RBP13.88□□□□□ -0.19
LINC00339-205ENST00000452322 CHURC1Q8WUH1 139 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 NUP133Q8WUM0 1156 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 CHMP4CQ96CF2 233 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 MYL10Q9BUA6 226 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 ZFYVE28Q9HCC9 887 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 RNF186Q9NXI6 227 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 HOXC10Q9NYD6 342 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 BRPF3Q9ULD4 1205 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 PPP1R9AQ9ULJ8 1098 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 ISY1Q9ULR0 285 aaKnown RBP13.88□□□□□ -0.19
LINC00339-205ENST00000452322 RLFQ13129 1914 aa13.88□□□□□ -0.19
LINC00339-205ENST00000452322 FRMPD2Q68DX3 1309 aaPredicted RBP13.88□□□□□ -0.19
LINC00339-205ENST00000452322 A0A0G2JMZ2 1700 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 PALM3A6NDB9 673 aaPredicted RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 SPDYE16A6NNV3 312 aaPredicted RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 ZBTB43O43298 467 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 DSG3P32926 999 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 KIF5BP33176 963 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 CRHR2Q13324 411 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 BTNL9Q6UXG8 535 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 MICU3Q86XE3 530 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 PRPF38AQ8NAV1 312 aaKnown RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 CTCFLQ8NI51 663 aaPredicted RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 SMCR8Q8TEV9 937 aaPredicted RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 P2RX7Q99572 595 aaKnown RBP13.87□□□□□ -0.19
LINC00339-205ENST00000452322 SLF1Q9BQI6 1058 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 BEGAINQ9BUH8 593 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 FBXO28Q9NVF7 368 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 WBP1LQ9NX94 342 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 MAD2L2Q9UI95 211 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 NID2Q14112 1375 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 ADGRA2Q96PE1 1338 aa13.87□□□□□ -0.19
LINC00339-205ENST00000452322 GOLGA8BA8MQT2 603 aa13.86□□□□□ -0.19
LINC00339-205ENST00000452322 TLR2O60603 784 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms