RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ADORA2AP29274 412 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 KLRC3Q07444 240 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 EXOC6Q8TAG9 804 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 EVI5LQ96CN4 794 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 NUP88Q99567 741 aaPredicted RBP24.76■■□□□ 1.55
SDC1-205ENST00000447124 NACAP1Q9BZK3 213 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 CLIP2Q9UDT6 1046 aa24.76■■□□□ 1.55
SDC1-205ENST00000447124 GREB1LQ9C091 1923 aaPredicted RBP24.75■■□□□ 1.55
SDC1-205ENST00000447124 AAMPQ13685 434 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 MFSD14CQ5VZR4 134 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 NCAPG2Q86XI2 1143 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 SMC5Q8IY18 1101 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 TRPV1Q8NER1 839 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 REPS2Q8NFH8 660 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 MKL1Q969V6 931 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 LNPKQ9C0E8 428 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 PPP1R9AQ9ULJ8 1098 aa24.75■■□□□ 1.55
SDC1-205ENST00000447124 VWA5AO00534 786 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 NDUFB10O96000 172 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 CYP2C19P33261 490 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 PPARAQ07869 468 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 VPS53Q5VIR6 699 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 DPP9Q86TI2 863 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 NEDD1Q8NHV4 660 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 CEP95Q96GE4 821 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 NBPF3Q9H094 633 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 NAPBQ9H115 298 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 MROH8Q9H579 483 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 INCENPQ9NQS7 918 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 MTMR4Q9NYA4 1195 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 TACC3Q9Y6A5 838 aa24.74■■□□□ 1.55
SDC1-205ENST00000447124 TRIOBPQ9H2D6 2365 aa24.73■■□□□ 1.55
SDC1-205ENST00000447124 FAM47AQ5JRC9 791 aa24.73■■□□□ 1.55
SDC1-205ENST00000447124 B4GALNT3Q6L9W6 998 aa24.73■■□□□ 1.55
SDC1-205ENST00000447124 RWDD1Q9H446 243 aaPredicted RBP24.73■■□□□ 1.55
SDC1-205ENST00000447124 NR2E3Q9Y5X4 410 aa24.73■■□□□ 1.55
SDC1-205ENST00000447124 EVI5O60447 810 aa24.72■■□□□ 1.55
SDC1-205ENST00000447124 CHRDL2Q6WN34 429 aa24.72■■□□□ 1.55
SDC1-205ENST00000447124 ZNF287Q9HBT7 754 aa24.72■■□□□ 1.55
SDC1-205ENST00000447124 A0A0G2JMZ2 1700 aa24.72■■□□□ 1.55
SDC1-205ENST00000447124 STAT3P40763 770 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 TFAP4Q01664 338 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 CTDSPL2Q05D32 466 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 RIOX2Q8IUF8 465 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 ABRAQ8N0Z2 381 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 FAM227BQ96M60 508 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 C11orf49Q9H6J7 331 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 HELLSQ9NRZ9 838 aa24.71■■□□□ 1.55
SDC1-205ENST00000447124 ZNF214Q9UL59 606 aaPredicted RBP24.71■■□□□ 1.55
SDC1-205ENST00000447124 PARP14Q460N5 1801 aa24.7■■□□□ 1.55
SDC1-205ENST00000447124 SLC25A27O95847 323 aa24.7■■□□□ 1.54
SDC1-205ENST00000447124 PDE4BQ07343 736 aa24.7■■□□□ 1.54
SDC1-205ENST00000447124 OLFML2BQ68BL8 750 aa24.7■■□□□ 1.54
SDC1-205ENST00000447124 PRO3102Q9H379 93 aa24.7■■□□□ 1.54
SDC1-205ENST00000447124 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.7■■□□□ 1.54
SDC1-205ENST00000447124 PFASO15067 1338 aa24.69■■□□□ 1.54
SDC1-205ENST00000447124 COL6A1P12109 1028 aa24.69■■□□□ 1.54
SDC1-205ENST00000447124 SLF1Q9BQI6 1058 aa24.69■■□□□ 1.54
SDC1-205ENST00000447124 RBM27Q9P2N5 1060 aaKnown RBP24.69■■□□□ 1.54
SDC1-205ENST00000447124 A0A0D9SFI3 127 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 TTLL1O95922 423 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 SLC3A2P08195 630 aaKnown RBP24.68■■□□□ 1.54
SDC1-205ENST00000447124 TSPY3P0CV98 308 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 TSPY8P0CW00 308 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 FCER1AP12319 257 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 CYBAP13498 195 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 CNGA1P29973 690 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 FXR1P51114 621 aaKnown RBP eCLIP24.68■■□□□ 1.54
SDC1-205ENST00000447124 ALX1Q15699 326 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 PRAMEF19Q5SWL8 479 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 PLEKHM2Q8IWE5 1019 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 LRRC47Q8N1G4 583 aaKnown RBP24.68■■□□□ 1.54
SDC1-205ENST00000447124 DDX20Q9UHI6 824 aaKnown RBP24.68■■□□□ 1.54
SDC1-205ENST00000447124 RIPK3Q9Y572 518 aa24.68■■□□□ 1.54
SDC1-205ENST00000447124 ALPK3Q96L96 1907 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 NUCB1Q02818 461 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 MCMDC2Q4G0Z9 681 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 CHD1LQ86WJ1 897 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 PRPF38AQ8NAV1 312 aaKnown RBP24.67■■□□□ 1.54
SDC1-205ENST00000447124 MAML3Q96JK9 1138 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 SUPT16HQ9Y5B9 1047 aaKnown RBP24.67■■□□□ 1.54
SDC1-205ENST00000447124 PLIN4Q96Q06 1357 aa24.67■■□□□ 1.54
SDC1-205ENST00000447124 PGK2P07205 417 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 NMIQ13287 307 aaPredicted RBP24.66■■□□□ 1.54
SDC1-205ENST00000447124 SLFN13Q68D06 897 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 GMCL1P1Q8NEA9 526 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 MMP19Q99542 508 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 IL17RBQ9NRM6 502 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 ANAPC4Q9UJX5 808 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 SYNPO2Q9UMS6 1093 aa24.66■■□□□ 1.54
SDC1-205ENST00000447124 ZNFX1Q9P2E3 1918 aaKnown RBP24.66■■□□□ 1.54
SDC1-205ENST00000447124 COL11A1P12107 1806 aaPredicted RBP24.65■■□□□ 1.54
SDC1-205ENST00000447124 FGAP02671 866 aa24.65■■□□□ 1.54
SDC1-205ENST00000447124 ZNF589Q86UQ0 364 aaPredicted RBP24.65■■□□□ 1.54
SDC1-205ENST00000447124 TICAM2Q86XR7 235 aa24.65■■□□□ 1.54
SDC1-205ENST00000447124 C7orf61Q8IZ16 206 aa24.65■■□□□ 1.54
SDC1-205ENST00000447124 SLC5A4Q9NY91 659 aa24.65■■□□□ 1.54
SDC1-205ENST00000447124 RANBP2P49792 3224 aaKnown RBP24.64■■□□□ 1.54
SDC1-205ENST00000447124 ZNF236Q9UL36 1845 aa24.64■■□□□ 1.54
SDC1-205ENST00000447124 TRIM6-TRIM34B2RNG4 842 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms