RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 FBF1Q8TES7 1133 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 EIF3CQ99613 913 aaKnown RBP9.46□□□□□ -0.89
PTPN3-204ENST00000446349 PCDHA12Q9UN75 941 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 FAM47CQ5HY64 1035 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 ISM2Q6H9L7 571 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 CABP7Q86V35 215 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 CACTINQ8WUQ7 758 aaKnown RBP9.46□□□□□ -0.89
PTPN3-204ENST00000446349 ATP2A3Q93084 1043 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 CCDC51Q96ER9 411 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 PLCD4Q9BRC7 762 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 COPRSQ9NQ92 184 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 PIM2Q9P1W9 311 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 UTP11Q9Y3A2 253 aaKnown RBP9.46□□□□□ -0.89
PTPN3-204ENST00000446349 KRT9P35527 623 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 USH1GQ495M9 461 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 GIMAP6Q6P9H5 292 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 ZNF654Q8IZM8 581 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 C2orf69Q8N8R5 385 aa9.46□□□□□ -0.89
PTPN3-204ENST00000446349 C16orf45Q96MC5 204 aaPredicted RBP9.46□□□□□ -0.89
PTPN3-204ENST00000446349 TRMT1Q9NXH9 659 aaKnown RBP9.46□□□□□ -0.89
PTPN3-204ENST00000446349 TAF5LO75529 589 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ZBTB16Q05516 673 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ALCAMQ13740 583 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ZNF365Q70YC5 407 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 SSH3Q8TE77 659 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 PI4KBQ9UBF8 816 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 IPO11Q9UI26 975 aaKnown RBP9.46□□□□□ -0.9
PTPN3-204ENST00000446349 PER1O15534 1290 aaPredicted RBP9.46□□□□□ -0.9
PTPN3-204ENST00000446349 MYL1P05976 194 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 LIG4P49917 911 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ARID5AQ03989 594 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 MIS18BP1Q6P0N0 1132 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ZNF449Q6P9G9 518 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 PFDN4Q9NQP4 134 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 CCPG1Q9ULG6 757 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 ZC3H13Q5T200 1668 aaKnown RBP9.46□□□□□ -0.9
PTPN3-204ENST00000446349 METTL23Q86XA0 190 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 PAGR1Q9BTK6 254 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 HESX1Q9UBX0 185 aa9.46□□□□□ -0.9
PTPN3-204ENST00000446349 GAP43P17677 238 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 ZAP70P43403 619 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 ZYXQ15942 572 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 TMTC1Q8IUR5 882 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 FOXP4Q8IVH2 680 aaPredicted RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 FBXO40Q9UH90 709 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 PTCH1Q13635 1447 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 KDM2BQ8NHM5 1336 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 TMEM110-MUSTN1A8MSY1 372 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 THAP12O43422 761 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 RRP9O43818 475 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 HARSP12081 509 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 CCND2P30279 289 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 HSPA4P34932 840 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 CHRNDQ07001 517 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 HADHQ16836 314 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 BLIDQ8IZY5 108 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 NACC1Q96RE7 527 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 FAM114A2Q9NRY5 505 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 BTDP43251 543 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 CIAPIN1Q6FI81 312 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 NEK8Q86SG6 692 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 NCAPG2Q86XI2 1143 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 ZMYM6O95789 1325 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 TLR3O15455 904 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 IFNL3Q8IZI9 196 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 RUNDC3BQ96NL0 473 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 LARP6Q9BRS8 491 aaKnown RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 JAG2Q9Y219 1238 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 HEG1Q9ULI3 1381 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 PLCD3Q8N3E9 789 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 SPATA31A6Q5VVP1 1343 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 IGSF1Q8N6C5 1336 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 IQCA1LA6NCM1 817 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 OATP04181 439 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 POLGP54098 1239 aaPredicted RBP9.45□□□□□ -0.9
PTPN3-204ENST00000446349 SEPT2Q15019 361 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 METTL13Q8N6R0 699 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 PNMA1Q8ND90 353 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 DYNC1I1O14576 645 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 SLFN13Q68D06 897 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 GDPD2Q9HCC8 539 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 NKIRAS1Q9NYS0 192 aa9.45□□□□□ -0.9
PTPN3-204ENST00000446349 TNNI1P19237 187 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 GBP1P32455 592 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 TRIM11Q96F44 468 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 TESPA1A2RU30 521 aaPredicted RBP9.44□□□□□ -0.9
PTPN3-204ENST00000446349 XRCC5P13010 732 aaKnown RBP9.44□□□□□ -0.9
PTPN3-204ENST00000446349 ALAS1P13196 640 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 LONP1P36776 959 aaKnown RBP9.44□□□□□ -0.9
PTPN3-204ENST00000446349 TTC16Q8NEE8 873 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 NCAPGQ9BPX3 1015 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 TRIM35Q9UPQ4 493 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 MBD5Q9P267 1494 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 MXRA7P84157 204 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 RPGRIP1Q96KN7 1286 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 SLC12A6Q9UHW9 1150 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 LRFN2Q9ULH4 789 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 TRPM1Q7Z4N2 1603 aa9.44□□□□□ -0.9
PTPN3-204ENST00000446349 USP17L12C9JPN9 530 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms