RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 FLOT1O75955 427 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 PGK1P00558 417 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 ZNF865P0CJ78 1059 aaPredicted RBP17.46■□□□□ 0.39
HMGN1-208ENST00000443046 PDE6AP16499 860 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 TAL1P17542 331 aaPredicted RBP17.46■□□□□ 0.39
HMGN1-208ENST00000443046 FAAP100Q0VG06 881 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 PLS1Q14651 629 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 ZKSCAN2Q63HK3 967 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 RNF180Q86T96 592 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 CRNKL1Q9BZJ0 848 aaKnown RBP17.46■□□□□ 0.39
HMGN1-208ENST00000443046 VCPKMTQ9H867 229 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 SWAP70Q9UH65 585 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 TRANK1O15050 2925 aa17.46■□□□□ 0.39
HMGN1-208ENST00000443046 MYH8P13535 1937 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.45■□□□□ 0.38
HMGN1-208ENST00000443046 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.45■□□□□ 0.38
HMGN1-208ENST00000443046 TCRBV5S4A2TA0A5A2 114 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 WDR46O15213 610 aaKnown RBP17.45■□□□□ 0.38
HMGN1-208ENST00000443046 ADAMTS4O75173 837 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 RAG1P15918 1043 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 DNAJB2P25686 324 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 FPGSQ05932 587 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 TJAP1Q5JTD0 557 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 RIOX2Q8IUF8 465 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 CLEC10AQ8IUN9 316 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 SPICE1Q8N0Z3 855 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 SLC44A5Q8NCS7 719 aa17.45■□□□□ 0.38
HMGN1-208ENST00000443046 TSEN34Q9BSV6 310 aaKnown RBP17.45■□□□□ 0.38
HMGN1-208ENST00000443046 PQBP1O60828 265 aaKnown RBP17.44■□□□□ 0.38
HMGN1-208ENST00000443046 PGK2P07205 417 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 CYP2D6P10635 497 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 TTF1Q15361 905 aaPredicted RBP17.44■□□□□ 0.38
HMGN1-208ENST00000443046 SLC9C2Q5TAH2 1124 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 CCSAPQ6IQ19 270 aaPredicted RBP17.44■□□□□ 0.38
HMGN1-208ENST00000443046 SDR42E1Q8WUS8 393 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 MMP19Q99542 508 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 ARHGEF10LQ9HCE6 1279 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 TMEM39AQ9NV64 488 aa17.44■□□□□ 0.38
HMGN1-208ENST00000443046 AKR1A1P14550 325 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 AKR1B1P15121 316 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 ICA1Q05084 483 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 LCORLQ8N3X6 602 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 REPS2Q8NFH8 660 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 DYNLL2Q96FJ2 89 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 ZNF576Q9H609 170 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 SH2D4AQ9H788 454 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 ZNF214Q9UL59 606 aaPredicted RBP17.43■□□□□ 0.38
HMGN1-208ENST00000443046 MYO9BQ13459 2157 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 ZNF532Q9HCE3 1301 aa17.43■□□□□ 0.38
HMGN1-208ENST00000443046 TNFRSF10AO00220 468 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 VWA5AO00534 786 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 TIMP1P01033 207 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 ACLYP53396 1101 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 RASIP1Q5U651 963 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 C16orf59Q7L2K0 433 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 AACSQ86V21 672 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 KLHDC9Q8NEP7 349 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 TBX21Q9UL17 535 aa17.42■□□□□ 0.38
HMGN1-208ENST00000443046 BAZ2AQ9UIF9 1905 aaKnown RBP17.41■□□□□ 0.38
HMGN1-208ENST00000443046 STAT3P40763 770 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 KCTD2Q14681 263 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 CEP85Q6P2H3 762 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 MSL3Q8N5Y2 521 aaKnown RBP17.41■□□□□ 0.38
HMGN1-208ENST00000443046 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.41■□□□□ 0.38
HMGN1-208ENST00000443046 LENG1Q96BZ8 264 aaPredicted RBP17.41■□□□□ 0.38
HMGN1-208ENST00000443046 TIFAQ96CG3 184 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 CCDC17Q96LX7 622 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.41■□□□□ 0.384e-7■■■□□ 15.1
HMGN1-208ENST00000443046 FBXO28Q9NVF7 368 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 EXOC6BQ9Y2D4 811 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 SYNRGQ9UMZ2 1314 aa17.41■□□□□ 0.38
HMGN1-208ENST00000443046 MOXD2PA6NHM9 499 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 DCDC2CA8MYV0 355 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 SMIM22K7EJ46 135 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 RLBP1P12271 317 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 CDK7P50613 346 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 MFSD5Q6N075 450 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 MAMDC4Q6UXC1 1216 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 ERC1Q8IUD2 1116 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 NUP133Q8WUM0 1156 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 STARD7Q9NQZ5 370 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 ATP8A2Q9NTI2 1148 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 PPP1R9AQ9ULJ8 1098 aa17.4■□□□□ 0.38
HMGN1-208ENST00000443046 PRKAB2O43741 272 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 SNAI1O95863 264 aaPredicted RBP17.39■□□□□ 0.37
HMGN1-208ENST00000443046 EEF2P13639 858 aaKnown RBP17.39■□□□□ 0.37
HMGN1-208ENST00000443046 COL9A1P20849 921 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 COPB2P35606 906 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 CDK8P49336 464 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 AKNAD1Q5T1N1 836 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 C12orf60Q5U649 245 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 ARMT1Q9H993 441 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 CNPY2Q9Y2B0 182 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 SYNGAP1Q96PV0 1343 aa17.39■□□□□ 0.37
HMGN1-208ENST00000443046 DNAJC25-GNG10A0A024R161 153 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 CST5P28325 142 aaPredicted RBP17.38■□□□□ 0.37
HMGN1-208ENST00000443046 KCNA10Q16322 511 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 TMEM240Q5SV17 173 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 C16orf86Q6ZW13 317 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 ATXN2LQ8WWM7 1075 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms