RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CABP5Q9NP86 173 aa14.45□□□□□ -0.1
PTPRF-208ENST00000437607 DDX20Q9UHI6 824 aaKnown RBP14.45□□□□□ -0.1
PTPRF-208ENST00000437607 POLR3DP05423 398 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-208ENST00000437607 CYP2D6P10635 497 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 CYP2C19P33261 490 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 ADD2P35612 726 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 MDM2Q00987 491 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-208ENST00000437607 SLC9C2Q5TAH2 1124 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 MFSD14CQ5VZR4 134 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 LCORLQ8N3X6 602 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 SDR42E1Q8WUS8 393 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 APPBP2Q92624 585 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 FAM227BQ96M60 508 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 SENP6Q9GZR1 1112 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-208ENST00000437607 MTMR10Q9NXD2 777 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 MCM9Q9NXL9 1143 aa14.44□□□□□ -0.1
PTPRF-208ENST00000437607 ZNF532Q9HCE3 1301 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 SMIM22K7EJ46 135 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 SGSM2O43147 1006 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 CYBAP13498 195 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 ATP2B2Q01814 1243 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 UBE3CQ15386 1083 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 SLFNL1Q499Z3 407 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 ZMYM1Q5SVZ6 1142 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 KIAA1211Q6ZU35 1233 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 SIAH1Q8IUQ4 282 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 SLC44A5Q8NCS7 719 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 LPAR1Q92633 364 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 MOV10L1Q9BXT6 1211 aaKnown RBP14.43□□□□□ -0.1
PTPRF-208ENST00000437607 DCP1AQ9NPI6 582 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-208ENST00000437607 ANO2Q9NQ90 1003 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 HELLSQ9NRZ9 838 aa14.43□□□□□ -0.1
PTPRF-208ENST00000437607 CCDC171Q6TFL3 1326 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 VCANP13611 3396 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 ADORA2AP29274 412 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 CNGA1P29973 690 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 COG2Q14746 738 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 CLEC10AQ8IUN9 316 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 CRNKL1Q9BZJ0 848 aaKnown RBP14.42□□□□□ -0.1
PTPRF-208ENST00000437607 STXBP5LQ9Y2K9 1186 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 IVNS1ABPQ9Y6Y0 642 aa14.42□□□□□ -0.1
PTPRF-208ENST00000437607 SPTBN5Q9NRC6 3674 aaKnown RBP14.41□□□□□ -0.1
PTPRF-208ENST00000437607 DNM1LO00429 736 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 MPHOSPH10O00566 681 aaKnown RBP14.41□□□□□ -0.1
PTPRF-208ENST00000437607 PRKAB2O43741 272 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 MSCO60682 206 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 COBLO75128 1261 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 ERCC3P19447 782 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 ATN1P54259 1190 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-208ENST00000437607 MCMDC2Q4G0Z9 681 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 GJC2Q5T442 439 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-208ENST00000437607 DYNLL2Q96FJ2 89 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 TANGO6Q9C0B7 1094 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 SPATC1LQ9H0A9 340 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 ARMT1Q9H993 441 aa14.41□□□□□ -0.1
PTPRF-208ENST00000437607 CHGBP05060 677 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 AKR1B1P15121 316 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 MCCP23508 829 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 DSG3P32926 999 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 RTP1P59025 263 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 ANO1Q5XXA6 986 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 OLFML2BQ68BL8 750 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 TMEM179Q6ZVK1 233 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 DPP9Q86TI2 863 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 SHCBP1Q8NEM2 672 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 HOXC10Q9NYD6 342 aa14.4□□□□□ -0.1
PTPRF-208ENST00000437607 CYP2D7A0A087X1C5 515 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 POTEB2H3BUK9 544 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 M0R2C6 588 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 STRNO43815 780 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 CCDC129Q6ZRS4 1044 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 ZNF589Q86UQ0 364 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-208ENST00000437607 OSBP2Q969R2 916 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 ATG4CQ96DT6 458 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 IL25Q9H293 177 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 SWAP70Q9UH65 585 aa14.39□□□□□ -0.11
PTPRF-208ENST00000437607 GPAA1O43292 621 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 EPB41L2O43491 1005 aaKnown RBP14.38□□□□□ -0.11
PTPRF-208ENST00000437607 MBD4O95243 580 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 SEC24BO95487 1268 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 PRAMEF19Q5SWL8 479 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 SLC39A5Q6ZMH5 540 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 SPICE1Q8N0Z3 855 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 GUCD1Q96NT3 240 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 SEC62Q99442 399 aaKnown RBP14.38□□□□□ -0.11
PTPRF-208ENST00000437607 VCPKMTQ9H867 229 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 TMX2Q9Y320 296 aa14.38□□□□□ -0.11
PTPRF-208ENST00000437607 SEPT4O43236 478 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 FLOT1O75955 427 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 TMEM132BQ14DG7 1078 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 SNX17Q15036 470 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 ABRAQ8N0Z2 381 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 MB21D1Q8N884 522 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 MAML3Q96JK9 1138 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 PUS7LQ9H0K6 701 aaKnown RBP14.37□□□□□ -0.11
PTPRF-208ENST00000437607 MROH8Q9H579 483 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 ATP11BQ9Y2G3 1177 aa14.37□□□□□ -0.11
PTPRF-208ENST00000437607 GBF1Q92538 1859 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 GNAT2P19087 354 aa14.36□□□□□ -0.11
PTPRF-208ENST00000437607 CDK8P49336 464 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms