RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SMCHD1A6NHR9 2005 aa20.44■□□□□ 0.86
TRIM39-209ENST00000428728 ERC2O15083 957 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 STRNO43815 780 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 APPP05067 770 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 TMEM132BQ14DG7 1078 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 TRPV1Q8NER1 839 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 PI4K2BQ8TCG2 481 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 MROH8Q9H579 483 aa20.43■□□□□ 0.86
TRIM39-209ENST00000428728 COBLO75128 1261 aa20.42■□□□□ 0.86
TRIM39-209ENST00000428728 COL6A1P12109 1028 aa20.42■□□□□ 0.86
TRIM39-209ENST00000428728 CYBAP13498 195 aa20.42■□□□□ 0.86
TRIM39-209ENST00000428728 LRRFIP1Q32MZ4 808 aaKnown RBP20.42■□□□□ 0.86
TRIM39-209ENST00000428728 SEC62Q99442 399 aaKnown RBP20.42■□□□□ 0.86
TRIM39-209ENST00000428728 NUP88Q99567 741 aaPredicted RBP20.42■□□□□ 0.86
TRIM39-209ENST00000428728 FSD1Q9BTV5 496 aa20.42■□□□□ 0.86
TRIM39-209ENST00000428728 MCM3APO60318 1980 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 PRDM1O75626 825 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 GNAT2P19087 354 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 LRRC26Q2I0M4 334 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 OLFML2BQ68BL8 750 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 PPP1R9AQ9ULJ8 1098 aa20.41■□□□□ 0.86
TRIM39-209ENST00000428728 RANBP2P49792 3224 aaKnown RBP20.4■□□□□ 0.86
TRIM39-209ENST00000428728 MSCO60682 206 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 FCER1AP12319 257 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 MX1P20591 662 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 LTBP2Q14767 1821 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 ANO1Q5XXA6 986 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 CRBNQ96SW2 442 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 SLC5A4Q9NY91 659 aa20.4■□□□□ 0.86
TRIM39-209ENST00000428728 A0A1W2PPC1 479 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 VWA5AO00534 786 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 SLC25A27O95847 323 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 IGHA2P01877 340 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 ABRAQ8N0Z2 381 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 MMP19Q99542 508 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 GDF15Q99988 308 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 SENP6Q9GZR1 1112 aaPredicted RBP20.39■□□□□ 0.85
TRIM39-209ENST00000428728 ADAMTS5Q9UNA0 930 aa20.39■□□□□ 0.85
TRIM39-209ENST00000428728 NDUFB10O96000 172 aa20.38■□□□□ 0.85
TRIM39-209ENST00000428728 MAGEA10P43363 369 aaPredicted RBP20.38■□□□□ 0.85
TRIM39-209ENST00000428728 RIOX2Q8IUF8 465 aa20.38■□□□□ 0.85
TRIM39-209ENST00000428728 IFNL3Q8IZI9 196 aa20.38■□□□□ 0.85
TRIM39-209ENST00000428728 MAML3Q96JK9 1138 aa20.38■□□□□ 0.85
TRIM39-209ENST00000428728 NYAP2Q9P242 653 aa20.38■□□□□ 0.85
TRIM39-209ENST00000428728 ZBTB47Q9UFB7 747 aaPredicted RBP20.38■□□□□ 0.85
TRIM39-209ENST00000428728 PATL2C9JE40 543 aaKnown RBP20.37■□□□□ 0.85
TRIM39-209ENST00000428728 SOX1O00570 391 aaPredicted RBP20.37■□□□□ 0.85
TRIM39-209ENST00000428728 MYCNP04198 464 aaPredicted RBP20.37■□□□□ 0.85
TRIM39-209ENST00000428728 PGK2P07205 417 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 ZMYM1Q5SVZ6 1142 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 PRAMEF19Q5SWL8 479 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 ZNF444Q8N0Y2 327 aaPredicted RBP20.37■□□□□ 0.85
TRIM39-209ENST00000428728 REPS2Q8NFH8 660 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 CEP95Q96GE4 821 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 SLF1Q9BQI6 1058 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 NACAP1Q9BZK3 213 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 NAPBQ9H115 298 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 ZNF287Q9HBT7 754 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 CLIP2Q9UDT6 1046 aa20.37■□□□□ 0.85
TRIM39-209ENST00000428728 ZNF214Q9UL59 606 aaPredicted RBP20.37■□□□□ 0.85
TRIM39-209ENST00000428728 SALL3Q9BXA9 1300 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 IGKV6D-41A0A0C4DH26 115 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 F5H6K3 240 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 DNM1LO00429 736 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 STAT3P40763 770 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 ATN1P54259 1190 aaPredicted RBP20.36■□□□□ 0.85
TRIM39-209ENST00000428728 KLRC3Q07444 240 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 KCTD2Q14681 263 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 GJC2Q5T442 439 aaPredicted RBP20.36■□□□□ 0.85
TRIM39-209ENST00000428728 ANKRD45Q5TZF3 282 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 LRRC47Q8N1G4 583 aaKnown RBP20.36■□□□□ 0.85
TRIM39-209ENST00000428728 LRCH3Q96II8 777 aa20.36■□□□□ 0.85
TRIM39-209ENST00000428728 PLIN4Q96Q06 1357 aa20.35■□□□□ 0.85
TRIM39-209ENST00000428728 SZT2Q5T011 3432 aa20.35■□□□□ 0.85
TRIM39-209ENST00000428728 SEPT4O43236 478 aa20.35■□□□□ 0.85
TRIM39-209ENST00000428728 BMP8BP34820 402 aa20.35■□□□□ 0.85
TRIM39-209ENST00000428728 CCDC129Q6ZRS4 1044 aa20.35■□□□□ 0.85
TRIM39-209ENST00000428728 YTHDC1Q96MU7 727 aaKnown RBP20.35■□□□□ 0.85
TRIM39-209ENST00000428728 KBTBD13C9JR72 458 aa20.34■□□□□ 0.85
TRIM39-209ENST00000428728 COPB2P35606 906 aa20.34■□□□□ 0.85
TRIM39-209ENST00000428728 SLC4A3P48751 1232 aa20.34■□□□□ 0.85
TRIM39-209ENST00000428728 FAM47AQ5JRC9 791 aa20.34■□□□□ 0.85
TRIM39-209ENST00000428728 SNRNP48Q6IEG0 339 aaKnown RBP20.34■□□□□ 0.85
TRIM39-209ENST00000428728 MTMR4Q9NYA4 1195 aa20.34■□□□□ 0.85
TRIM39-209ENST00000428728 ISY1Q9ULR0 285 aaKnown RBP20.34■□□□□ 0.85
TRIM39-209ENST00000428728 TTLL1O95922 423 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 SLC3A2P08195 630 aaKnown RBP20.33■□□□□ 0.85
TRIM39-209ENST00000428728 TSPY3P0CV98 308 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 TSPY8P0CW00 308 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 MDM2Q00987 491 aaPredicted RBP20.33■□□□□ 0.85
TRIM39-209ENST00000428728 PDE4BQ07343 736 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 PPARAQ07869 468 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 ARRDC4Q8NCT1 418 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 KIFC2Q96AC6 838 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 TEX13BQ9BXU2 312 aa20.33■□□□□ 0.85
TRIM39-209ENST00000428728 UBE2OQ9C0C9 1292 aaKnown RBP20.33■□□□□ 0.85
TRIM39-209ENST00000428728 CTDP1Q9Y5B0 961 aaPredicted RBP20.33■□□□□ 0.85
TRIM39-209ENST00000428728 RTP1P59025 263 aa20.32■□□□□ 0.84
TRIM39-209ENST00000428728 CPXCR1Q8N123 301 aa20.32■□□□□ 0.84
TRIM39-209ENST00000428728 PRPF38AQ8NAV1 312 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms