RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 EVX2Q03828 476 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 RBM43Q6ZSC3 357 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 CMTR1Q8N1G2 835 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 ZNF579Q8NAF0 562 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 MTMR14Q8NCE2 650 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 DAGLBQ8NCG7 672 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 TRIM44Q96DX7 344 aaPredicted RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 TIGD1Q96MW7 591 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 SDF4Q9BRK5 362 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 PYM1Q9BRP8 204 aaKnown RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 RBSNQ9H1K0 784 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 KANSL2Q9H9L4 492 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 CABP5Q9NP86 173 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 GJB4Q9NTQ9 266 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 VPS54Q9P1Q0 977 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 SYNPO2Q9UMS6 1093 aa10.84□□□□□ -0.67
HMGB4-201ENST00000425537 ZBTB12Q9Y330 459 aaPredicted RBP10.84□□□□□ -0.67
HMGB4-201ENST00000425537 ADAMTSL1Q8N6G6 1762 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 IGKV6D-41A0A0C4DH26 115 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 PSMD14O00487 310 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 SHMT1P34896 483 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 TNNI2P48788 182 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 EIF6P56537 245 aaKnown RBP10.83□□□□□ -0.68
HMGB4-201ENST00000425537 CXCL9Q07325 125 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 CERKLQ49MI3 558 aaPredicted RBP10.83□□□□□ -0.68
HMGB4-201ENST00000425537 CIAPIN1Q6FI81 312 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 TMEM179Q6ZVK1 233 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 BLIDQ8IZY5 108 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 ZNF784Q8NCA9 323 aaPredicted RBP10.83□□□□□ -0.68
HMGB4-201ENST00000425537 FERMT2Q96AC1 680 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 FTOQ9C0B1 505 aaKnown RBP eCLIP10.83□□□□□ -0.68
HMGB4-201ENST00000425537 NAT10Q9H0A0 1025 aaKnown RBP10.83□□□□□ -0.68
HMGB4-201ENST00000425537 GLT8D2Q9H1C3 349 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 RRAGCQ9HB90 399 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 C6orf50Q9HD87 102 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 BARHL2Q9NY43 387 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 NYAP2Q9P242 653 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 PCDHA4Q9UN74 947 aa10.83□□□□□ -0.68
HMGB4-201ENST00000425537 FAM237AA0A1B0GTK4 181 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 CCDC194A0A1B0GVG4 234 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 SPDYE2BA6NHP3 402 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 FZD9O00144 591 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 SPDYE6P0CI01 402 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 AKR1B1P15121 316 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 GMPSP49915 693 aaPredicted RBP10.82□□□□□ -0.68
HMGB4-201ENST00000425537 TYRO3Q06418 890 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 TRAF1Q13077 416 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 PTPAQ15257 358 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 RBM26Q5T8P6 1007 aaKnown RBP10.82□□□□□ -0.68
HMGB4-201ENST00000425537 KANK3Q6NY19 840 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 PPP1R18Q6NYC8 613 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 TATDN1Q6P1N9 297 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 METTL16Q86W50 562 aaKnown RBP10.82□□□□□ -0.68
HMGB4-201ENST00000425537 FMR1NBQ8N0W7 255 aaPredicted RBP10.82□□□□□ -0.68
HMGB4-201ENST00000425537 ENGASEQ8NFI3 743 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 DCAF4Q8WV16 495 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 FAM151AQ8WW52 585 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 GMLQ99445 158 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 TDRD3Q9H7E2 651 aaKnown RBP10.82□□□□□ -0.68
HMGB4-201ENST00000425537 ANO10Q9NW15 660 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 CLIP2Q9UDT6 1046 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 FAM198AQ9UFP1 575 aa10.82□□□□□ -0.68
HMGB4-201ENST00000425537 ESYT2A0FGR8 921 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 SNHG28P0DPA3 235 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 PDHBP11177 359 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 SYKP43405 635 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 TCP10Q12799 353 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 NFIAQ12857 509 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 NR5A1Q13285 461 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 ORC2Q13416 577 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 TNFAIP1Q13829 316 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 CAMK4Q16566 473 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 STX1AQ16623 288 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 ABCB5Q2M3G0 1257 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 AXDND1Q5T1B0 1012 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 RESP18Q5W5W9 173 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 MCTP2Q6DN12 878 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 KRT25Q7Z3Z0 450 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 HEATR3Q7Z4Q2 680 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 FAM83AQ86UY5 434 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 ELOA2Q8IYF1 753 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 STAG2Q8N3U4 1231 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 FAM200AQ8TCP9 573 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 MKL1Q969V6 931 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 PPP1R9BQ96SB3 815 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 FUCA2Q9BTY2 467 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 RIOX1Q9H6W3 641 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 GPBP1L1Q9HC44 474 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 ZNF70Q9UC06 446 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 USP25Q9UHP3 1055 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 SRPRBQ9Y5M8 271 aaKnown RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 GREB1LQ9C091 1923 aaPredicted RBP10.81□□□□□ -0.68
HMGB4-201ENST00000425537 UTRNP46939 3433 aa10.81□□□□□ -0.68
HMGB4-201ENST00000425537 A0A1B0GVL5 298 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 GLTPD2A6NH11 291 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 LAD1O00515 517 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 ZNF202O95125 648 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 POTEIP0CG38 1075 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 POTEJP0CG39 1038 aa10.8□□□□□ -0.68
HMGB4-201ENST00000425537 PFKFB1P16118 471 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms