RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 MB21D1Q8N884 522 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 KAT14Q9H8E8 782 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 EFCC1Q9HA90 598 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 FEM1BQ9UK73 627 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 TAF6LQ9Y6J9 622 aa27.13■■□□□ 1.93
SMARCB1-205ENST00000417137 MCCP23508 829 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 FCGRTP55899 365 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 KRT32Q14532 448 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 PKN2Q16513 984 aaKnown RBP27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 TSGA10IPQ3SY00 556 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 NUP88Q99567 741 aaPredicted RBP27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 PAGR1Q9BTK6 254 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 ISY1Q9ULR0 285 aaKnown RBP27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 GTF3C3Q9Y5Q9 886 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 TNKSO95271 1327 aa27.12■■□□□ 1.93
SMARCB1-205ENST00000417137 FMNL1O95466 1100 aaPredicted RBP27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 HOXD10P28358 340 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 PSMC4P43686 418 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 CCNA1P78396 465 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 SAMD1Q6SPF0 538 aaPredicted RBP27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 CYB5R4Q7L1T6 521 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 ENAHQ8N8S7 591 aaPredicted RBP27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 PRPF38AQ8NAV1 312 aaKnown RBP27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 CHURC1Q8WUH1 139 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 DCAF4Q8WV16 495 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 SLF1Q9BQI6 1058 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 TRIM17Q9Y577 477 aa27.11■■□□□ 1.93
SMARCB1-205ENST00000417137 CASP8AP2Q9UKL3 1982 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 IFIT3O14879 490 aaKnown RBP27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 ERVK-9P63128 1117 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 ERVK-24P63145 666 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 IFIT1BQ5T764 474 aaKnown RBP27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 CCAR1Q8IX12 1150 aaKnown RBP27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 MTA3Q9BTC8 594 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 TXNRD2Q9NNW7 524 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 PPP1R9AQ9ULJ8 1098 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 MTMR7Q9Y216 660 aa27.1■■□□□ 1.93
SMARCB1-205ENST00000417137 MCM5P33992 734 aa27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 HSPA4P34932 840 aa27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 OTOP1Q7RTM1 612 aa27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 FAM160B2Q86V87 743 aa27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 MB21D2Q8IYB1 491 aaPredicted RBP27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 MCOLN1Q9GZU1 580 aa27.09■■□□□ 1.93
SMARCB1-205ENST00000417137 TMEM232C9JQI7 657 aa27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 IKQ13123 557 aaPredicted RBP27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 PNMA1Q8ND90 353 aa27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 ATG4CQ96DT6 458 aa27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 FBXO28Q9NVF7 368 aa27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 ADAMTS5Q9UNA0 930 aa27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 CTDP1Q9Y5B0 961 aaPredicted RBP27.08■■□□□ 1.93
SMARCB1-205ENST00000417137 PLA2G6O60733 806 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 STAT2P52630 851 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 PRMT2P55345 433 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 SEC23AQ15436 765 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 CCDC96Q2M329 555 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 Q3C1V9 767 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 KCNB2Q92953 911 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 NEK1Q96PY6 1258 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 ARHGAP39Q9C0H5 1083 aa27.07■■□□□ 1.92
SMARCB1-205ENST00000417137 MYH4Q9Y623 1939 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 VWA5AO00534 786 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 TNPO2O14787 897 aaKnown RBP27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 ECM2O94769 699 aaPredicted RBP27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 FDX1P10109 184 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 MAPK4P31152 587 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 WTAPQ15007 396 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 TMEM67Q5HYA8 995 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 POTEEQ6S8J3 1075 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 CHST3Q7LGC8 479 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 KIFC2Q96AC6 838 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 COA7Q96BR5 231 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 CHMP4CQ96CF2 233 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 TRIM47Q96LD4 638 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 USP26Q9BXU7 913 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 BTBD7Q9P203 1132 aa27.06■■□□□ 1.92
SMARCB1-205ENST00000417137 PRC1O43663 620 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 ZBED4O75132 1171 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 CNMDO75829 334 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 SLC34A2O95436 690 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 HMGB1P09429 215 aaKnown RBP27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 PDHBP11177 359 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 KCTD1Q719H9 257 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 RASEFQ8IZ41 740 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 TMTC2Q8N394 836 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 TMEM87BQ96K49 555 aa27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 CWC22Q9HCG8 908 aaKnown RBP27.05■■□□□ 1.92
SMARCB1-205ENST00000417137 PLS1Q14651 629 aa27.04■■□□□ 1.92
SMARCB1-205ENST00000417137 GPATCH4Q5T3I0 446 aaKnown RBP27.04■■□□□ 1.92
SMARCB1-205ENST00000417137 PEX10O60683 326 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 SNHG28P0DPA3 235 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 CTGFP29279 349 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 ANTXR2P58335 489 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 FBXO46Q6PJ61 603 aaPredicted RBP27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 IGDCC4Q8TDY8 1250 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 SPATC1LQ9H0A9 340 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 SRRDQ9UH36 339 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 PTPN22Q9Y2R2 807 aa27.03■■□□□ 1.92
SMARCB1-205ENST00000417137 CAP1Q01518 475 aa27.02■■□□□ 1.92
SMARCB1-205ENST00000417137 ZNF543Q08ER8 600 aa27.02■■□□□ 1.92
SMARCB1-205ENST00000417137 DHX32Q7L7V1 743 aaKnown RBP27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms