RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 HNRNPLLQ8WVV9 542 aaKnown RBP4.39□□□□□ -1.71
RTN4-209ENST00000405240 PKNOX2Q96KN3 472 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 MAD2L2Q9UI95 211 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 RAB21Q9UL25 225 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 V9GY48 417 aaPredicted RBP4.39□□□□□ -1.71
RTN4-209ENST00000405240 SYNRGQ9UMZ2 1314 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 CYP2D7A0A087X1C5 515 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 PNMA6AP0CW24 399 aaPredicted RBP4.39□□□□□ -1.71
RTN4-209ENST00000405240 SMARCA1P28370 1054 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 PRPHP41219 470 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 ARHGAP25P42331 645 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 NAALADL2Q58DX5 795 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 C12orf60Q5U649 245 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 GALNT17Q6IS24 598 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 MSANTD4Q8NCY6 345 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 RABGGTAQ92696 567 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 CELF1Q92879 486 aaKnown RBP4.39□□□□□ -1.71
RTN4-209ENST00000405240 ANKRD2Q9GZV1 360 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 DNAJC5Q9H3Z4 198 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 NARFQ9UHQ1 456 aa4.39□□□□□ -1.71
RTN4-209ENST00000405240 PLIN4Q96Q06 1357 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 FLT1P17948 1338 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 MAP2K7O14733 419 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PRDM1O75626 825 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 TBC1D8O95759 1140 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 VEGFAP15692 232 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 KLRK1P26718 216 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ADKP55263 362 aaKnown RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 TUBB4BP68371 445 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PTGDRQ13258 359 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ZNF827Q17R98 1081 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 TBC1D9BQ66K14 1250 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 TRMT44Q8IYL2 757 aaKnown RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 CCSER1Q9C0I3 900 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PRDM10Q9NQV6 1147 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 KBTBD4Q9NVX7 518 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 MYO1AQ9UBC5 1043 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 KAT6BQ8WYB5 2073 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 RBBP6Q7Z6E9 1792 aaKnown RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 MYH4Q9Y623 1939 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 FAM205AQ6ZU69 1335 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 A0A1W2PQC6 194 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PALM3A6NDB9 673 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 USP17L12C9JPN9 530 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 USP17L21D6R901 530 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 RNF225M0QZC1 329 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 LAD1O00515 517 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 AMPD2Q01433 879 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ORC2Q13416 577 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 TRIM14Q14142 442 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 CCDC178Q5BJE1 867 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 CAVIN4Q5BKX8 364 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 CNNM4Q6P4Q7 775 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 FOXR2Q6PJQ5 311 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 IQCA1Q86XH1 822 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ADSSL1Q8N142 457 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 LRRC15Q8TF66 581 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 DHX58Q96C10 678 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 DNAJC7Q99615 494 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 TTYH3Q9C0H2 523 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PCDHA6Q9UN73 950 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PCDHA4Q9UN74 947 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 PCDHA8Q9Y5H6 950 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 SOWAHDA6NJG2 315 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 RHOBTB3O94955 611 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 CASQ1P31415 396 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ERVK-24P63145 666 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 MTF1Q14872 753 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 KRT31Q15323 416 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 ARHGAP29Q52LW3 1261 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 TCP11X2Q5H9J9 407 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 RRP12Q5JTH9 1297 aaKnown RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 CC2D1AQ6P1N0 951 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 IQUBQ8NA54 791 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 NUP133Q8WUM0 1156 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 NYXQ9GZU5 481 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 MAGEF1Q9HAY2 307 aa4.38□□□□□ -1.71
RTN4-209ENST00000405240 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.38□□□□□ -1.71
RTN4-209ENST00000405240 V9GYY5 206 aaPredicted RBP4.38□□□□□ -1.71
RTN4-209ENST00000405240 RASSF10A6NK89 507 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 MINDY4BA8MYZ0 360 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 STXBP3O00186 592 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 NMT2O60551 498 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 RPS6KA4O75676 772 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 SASH3O75995 380 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 CCDC175P0C221 793 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 CALML3P27482 149 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 HOXA7P31268 230 aaPredicted RBP4.37□□□□□ -1.71
RTN4-209ENST00000405240 FXR1P51114 621 aaKnown RBP eCLIP4.37□□□□□ -1.719e-8■■■■□ 20
RTN4-209ENST00000405240 RPS8P62241 208 aaKnown RBP4.37□□□□□ -1.71
RTN4-209ENST00000405240 ZNF174Q15697 407 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 MEA1Q16626 185 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 PTPN21Q16825 1174 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 TYW1BQ6NUM6 668 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 TMTC1Q8IUR5 882 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 CNGA4Q8IV77 575 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 BLIDQ8IZY5 108 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 SYTL4Q96C24 671 aaPredicted RBP4.37□□□□□ -1.71
RTN4-209ENST00000405240 CARD6Q9BX69 1037 aa4.37□□□□□ -1.71
RTN4-209ENST00000405240 CRNKL1Q9BZJ0 848 aaKnown RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms