RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 RBM28Q9NW13 759 aaKnown RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 NAP1L2Q9ULW6 460 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-201ENST00000404210 HPS5Q9UPZ3 1129 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 PTPRFP10586 1907 aa14.37□□□□□ -0.11
LINC00339-201ENST00000404210 NID2Q14112 1375 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 CCDC196A0A1B0GTZ2 297 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 TESPA1A2RU30 521 aaPredicted RBP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 FAM155AB1AL88 458 aaPredicted RBP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 WDR46O15213 610 aaKnown RBP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 RAD21O60216 631 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 PLA2G6O60733 806 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 CETPP11597 493 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 SMARCA1P28370 1054 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 KIF5BP33176 963 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 METAP2P50579 478 aaKnown RBP eCLIP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 INHBEP58166 350 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 ZNF543Q08ER8 600 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 NOL8Q76FK4 1167 aaKnown RBP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 LZTS2Q9BRK4 669 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 FAM217BQ9NTX9 383 aaPredicted RBP14.36□□□□□ -0.11
LINC00339-201ENST00000404210 FOXD4L1Q9NU39 408 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 MAD2L2Q9UI95 211 aa14.36□□□□□ -0.11
LINC00339-201ENST00000404210 MANSC4A6NHS7 340 aaPredicted RBP14.35□□□□□ -0.11
LINC00339-201ENST00000404210 GOLGA8AA7E2F4 631 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 GOLGA8BA8MQT2 603 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 HOXA7P31268 230 aaPredicted RBP14.35□□□□□ -0.11
LINC00339-201ENST00000404210 C1QTNF8P60827 252 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 CCT2P78371 535 aaKnown RBP14.35□□□□□ -0.11
LINC00339-201ENST00000404210 MOGSQ13724 837 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 RTN1Q16799 776 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 BTNL9Q6UXG8 535 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 MICU3Q86XE3 530 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 SPICE1Q8N0Z3 855 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 CHURC1Q8WUH1 139 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 TMX3Q96JJ7 454 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 MTMR7Q9Y216 660 aa14.35□□□□□ -0.11
LINC00339-201ENST00000404210 RBM19Q9Y4C8 960 aaKnown RBP14.35□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L15C9J2P7 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L13C9JLJ4 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L11C9JVI0 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L18D6R9N7 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L22D6RA61 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L17D6RBQ6 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L19D6RCP7 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L20D6RJB6 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
LINC00339-201ENST00000404210 DHX16O60231 1041 aaKnown RBP14.34□□□□□ -0.11
LINC00339-201ENST00000404210 LARGE1O95461 756 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 VCAM1P19320 739 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 RXRAP19793 462 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 CDC27P30260 824 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 ADD1P35611 737 aaKnown RBP14.34□□□□□ -0.11
LINC00339-201ENST00000404210 USP17L24Q0WX57 530 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 SCRN1Q12765 414 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 STK3Q13188 491 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 FAM83BQ5T0W9 1011 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 GADL1Q6ZQY3 521 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 CATSPERGQ6ZRH7 1159 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 KCTD1Q719H9 257 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 FAM160B2Q86V87 743 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 RAB11FIP4Q86YS3 637 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 HSCBQ8IWL3 235 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 CCDC144CPQ8IYA2 1237 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 STAG2Q8N3U4 1231 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 RPAP3Q9H6T3 665 aaPredicted RBP14.34□□□□□ -0.11
LINC00339-201ENST00000404210 GPCPD1Q9NPB8 672 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 FEM1BQ9UK73 627 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 AGTPBP1Q9UPW5 1226 aa14.34□□□□□ -0.11
LINC00339-201ENST00000404210 CCL15-CCL14A0A0B4J2E2 113 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 TMEM232C9JQI7 657 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 KLRF2D3W0D1 207 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 MKRN3Q13064 507 aaKnown RBP14.33□□□□□ -0.12
LINC00339-201ENST00000404210 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.123e-16■■■■■ 34.8
LINC00339-201ENST00000404210 DGKZQ13574 1117 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 BECN1Q14457 450 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 CCL15Q16663 113 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 CCDC96Q2M329 555 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 CYP4F22Q6NT55 531 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 GPAT2Q6NUI2 795 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-201ENST00000404210 GTF3C6Q969F1 213 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 NUP88Q99567 741 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-201ENST00000404210 SLC45A1Q9Y2W3 748 aa14.33□□□□□ -0.12
LINC00339-201ENST00000404210 FRMPD2Q68DX3 1309 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-201ENST00000404210 CAPN15O75808 1086 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 GOLGA8HP0CJ92 632 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 HSPA6P17066 643 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 TM4SF4P48230 202 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 NOGQ13253 232 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 CUL4AQ13619 759 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 COG2Q14746 738 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 NTRK3Q16288 839 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 TREML2Q5T2D2 321 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 TTBK2Q6IQ55 1244 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 CPLX2Q6PUV4 134 aaKnown RBP14.32□□□□□ -0.12
LINC00339-201ENST00000404210 PAXIP1Q6ZW49 1069 aaPredicted RBP14.32□□□□□ -0.12
LINC00339-201ENST00000404210 TMTC3Q6ZXV5 915 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 ANKRD23Q86SG2 305 aa14.32□□□□□ -0.12
LINC00339-201ENST00000404210 SRBD1Q8N5C6 995 aaKnown RBP14.32□□□□□ -0.12
LINC00339-201ENST00000404210 NECAB1Q8N987 351 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms