RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 TANGO6Q9C0B7 1094 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 RNF186Q9NXI6 227 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 PNMA3Q9UL41 463 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 SNHG28P0DPA3 235 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 PDHBP11177 359 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 SLC1A4P43007 532 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 Q6ZUG5 572 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 SGMS1Q86VZ5 419 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 CHMP4CQ96CF2 233 aa34.36■■■■□ 3.09
USP42-202ENST00000404008 ASCC2Q9H1I8 757 aaPredicted RBP34.36■■■■□ 3.09
USP42-202ENST00000404008 BMP3P12645 472 aa34.35■■■■□ 3.09
USP42-202ENST00000404008 OSBPP22059 807 aa34.35■■■■□ 3.09
USP42-202ENST00000404008 AGXT2Q9BYV1 514 aa34.35■■■■□ 3.09
USP42-202ENST00000404008 WBP1LQ9NX94 342 aa34.35■■■■□ 3.09
USP42-202ENST00000404008 CYP2C8P10632 490 aa34.34■■■■□ 3.09
USP42-202ENST00000404008 IRX3P78415 501 aaPredicted RBP34.34■■■■□ 3.09
USP42-202ENST00000404008 FGD1P98174 961 aa34.34■■■■□ 3.09
USP42-202ENST00000404008 TAF1CQ15572 869 aaPredicted RBP34.34■■■■□ 3.09
USP42-202ENST00000404008 NFXL1Q6ZNB6 911 aa34.34■■■■□ 3.09
USP42-202ENST00000404008 PARK7Q99497 189 aaKnown RBP34.34■■■■□ 3.09
USP42-202ENST00000404008 CCDC69A6NI79 296 aa34.33■■■■□ 3.09
USP42-202ENST00000404008 CATIPQ7Z7H3 387 aa34.33■■■■□ 3.09
USP42-202ENST00000404008 CFHR5Q9BXR6 569 aa34.33■■■■□ 3.09
USP42-202ENST00000404008 SAGE1Q9NXZ1 904 aa34.33■■■■□ 3.09
USP42-202ENST00000404008 A0A0G2JMZ2 1700 aa34.32■■■■□ 3.09
USP42-202ENST00000404008 CA12O43570 354 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 TRPA1O75762 1119 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 TROAPQ12815 778 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 CRHR2Q13324 411 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 KCTD1Q719H9 257 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 ZNF654Q8IZM8 581 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 PDRG1Q9NUG6 133 aa34.32■■■■□ 3.08
USP42-202ENST00000404008 CCDC96Q2M329 555 aa34.31■■■■□ 3.08
USP42-202ENST00000404008 P2RX7Q99572 595 aaKnown RBP34.31■■■■□ 3.08
USP42-202ENST00000404008 BEGAINQ9BUH8 593 aa34.31■■■■□ 3.08
USP42-202ENST00000404008 FBXO28Q9NVF7 368 aa34.31■■■■□ 3.08
USP42-202ENST00000404008 FLOT1O75955 427 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 ZNF543Q08ER8 600 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 COG2Q14746 738 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 BRF1Q92994 677 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 ZFYVE28Q9HCC9 887 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 SLC12A7Q9Y666 1083 aa34.3■■■■□ 3.08
USP42-202ENST00000404008 DDAH1O94760 285 aa34.29■■■■□ 3.08
USP42-202ENST00000404008 HERVK_113P62684 666 aa34.29■■■■□ 3.08
USP42-202ENST00000404008 TOB2Q14106 344 aaPredicted RBP34.29■■■■□ 3.08
USP42-202ENST00000404008 FEM1BQ9UK73 627 aa34.29■■■■□ 3.08
USP42-202ENST00000404008 BRPF3Q9ULD4 1205 aa34.29■■■■□ 3.08
USP42-202ENST00000404008 ISY1Q9ULR0 285 aaKnown RBP34.29■■■■□ 3.08
USP42-202ENST00000404008 FRMPD2Q68DX3 1309 aaPredicted RBP34.29■■■■□ 3.08
USP42-202ENST00000404008 ADGRA2Q96PE1 1338 aa34.29■■■■□ 3.08
USP42-202ENST00000404008 COL11A1P12107 1806 aaPredicted RBP34.28■■■■□ 3.08
USP42-202ENST00000404008 MYPNQ86TC9 1320 aa34.28■■■■□ 3.08
USP42-202ENST00000404008 TMEM232C9JQI7 657 aa34.28■■■■□ 3.08
USP42-202ENST00000404008 SMCR8Q8TEV9 937 aaPredicted RBP34.28■■■■□ 3.08
USP42-202ENST00000404008 MYL10Q9BUA6 226 aa34.28■■■■□ 3.08
USP42-202ENST00000404008 ALDH8A1Q9H2A2 487 aaPredicted RBP34.28■■■■□ 3.08
USP42-202ENST00000404008 PLA2G6O60733 806 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 NEK4P51957 841 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 STAT2P52630 851 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 GRM4Q14833 912 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 ASPRV1Q53RT3 343 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 GPATCH4Q5T3I0 446 aaKnown RBP34.27■■■■□ 3.08
USP42-202ENST00000404008 APOA5Q6Q788 366 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 MAP3K14Q99558 947 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 SLF1Q9BQI6 1058 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 HOXC10Q9NYD6 342 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 PPP1R9AQ9ULJ8 1098 aa34.27■■■■□ 3.08
USP42-202ENST00000404008 SPDYE16A6NNV3 312 aaPredicted RBP34.26■■■■□ 3.08
USP42-202ENST00000404008 TLR2O60603 784 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 TBC1D8O95759 1140 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 PARP1P09874 1014 aaKnown RBP34.26■■■■□ 3.08
USP42-202ENST00000404008 DSG3P32926 999 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 APOBRQ0VD83 1088 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 LBX2Q6XYB7 198 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 R3HDMLQ9H3Y0 253 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 GPCPD1Q9NPB8 672 aa34.26■■■■□ 3.08
USP42-202ENST00000404008 KLF18A0A0U1RQI7 1052 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 GOLGA8HP0CJ92 632 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 TTBK2Q6IQ55 1244 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 FAM160B2Q86V87 743 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 NUP133Q8WUM0 1156 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 MAD2L2Q9UI95 211 aa34.25■■■■□ 3.07
USP42-202ENST00000404008 CALM1P0DP23 149 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 CALM2P0DP24 149 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 CALM3P0DP25 149 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 EVCP57679 992 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 POTEEQ6S8J3 1075 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 BTNL9Q6UXG8 535 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 SYNE3Q6ZMZ3 975 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 PRPF38AQ8NAV1 312 aaKnown RBP34.24■■■■□ 3.07
USP42-202ENST00000404008 CHURC1Q8WUH1 139 aa34.24■■■■□ 3.07
USP42-202ENST00000404008 PALM3A6NDB9 673 aaPredicted RBP34.23■■■■□ 3.07
USP42-202ENST00000404008 GCLCP48506 637 aaPredicted RBP34.23■■■■□ 3.07
USP42-202ENST00000404008 IKQ13123 557 aaPredicted RBP34.23■■■■□ 3.07
USP42-202ENST00000404008 GTF3C2Q8WUA4 911 aaPredicted RBP34.23■■■■□ 3.07
USP42-202ENST00000404008 ATG4CQ96DT6 458 aa34.23■■■■□ 3.07
USP42-202ENST00000404008 ADAMTS5Q9UNA0 930 aa34.23■■■■□ 3.07
USP42-202ENST00000404008 ZBTB43O43298 467 aa34.23■■■■□ 3.07
USP42-202ENST00000404008 RXRAP19793 462 aa34.23■■■■□ 3.07
USP42-202ENST00000404008 RABEP1Q15276 862 aa34.23■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms