RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 XPNPEP3Q9NQH7 507 aa19.49■□□□□ 0.71
CUX2-202ENST00000397643 SWAP70Q9UH65 585 aa19.49■□□□□ 0.71
CUX2-202ENST00000397643 NRBP1Q9UHY1 535 aa19.49■□□□□ 0.71
CUX2-202ENST00000397643 ADAMTS5Q9UNA0 930 aa19.49■□□□□ 0.71
CUX2-202ENST00000397643 PLXNA1Q9UIW2 1896 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 TMEM265A0A087WTH1 108 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 KIAA0355O15063 1070 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 CLTBP09497 229 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 FCER1AP12319 257 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 TAL1P17542 331 aaPredicted RBP19.48■□□□□ 0.71
CUX2-202ENST00000397643 ICA1Q05084 483 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 TTF1Q15361 905 aaPredicted RBP19.48■□□□□ 0.71
CUX2-202ENST00000397643 FTSJ3Q8IY81 847 aaKnown RBP19.48■□□□□ 0.71
CUX2-202ENST00000397643 ARHGEF10LQ9HCE6 1279 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 IL1RAPL2Q9NP60 686 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 TACC3Q9Y6A5 838 aa19.48■□□□□ 0.71
CUX2-202ENST00000397643 BAZ2AQ9UIF9 1905 aaKnown RBP19.47■□□□□ 0.71
CUX2-202ENST00000397643 WDR46O15213 610 aaKnown RBP19.47■□□□□ 0.71
CUX2-202ENST00000397643 PGK1P00558 417 aa19.47■□□□□ 0.71
CUX2-202ENST00000397643 PGK2P07205 417 aa19.47■□□□□ 0.71
CUX2-202ENST00000397643 RARBP10826 455 aa19.47■□□□□ 0.71
CUX2-202ENST00000397643 FOSL2P15408 326 aa19.47■□□□□ 0.71
CUX2-202ENST00000397643 LENG1Q96BZ8 264 aaPredicted RBP19.47■□□□□ 0.71
CUX2-202ENST00000397643 RNPC3Q96LT9 517 aaKnown RBP19.47■□□□□ 0.71
CUX2-202ENST00000397643 FBXO28Q9NVF7 368 aa19.47■□□□□ 0.71
CUX2-202ENST00000397643 A0A1W2PQ45 241 aaPredicted RBP19.46■□□□□ 0.71
CUX2-202ENST00000397643 A0A1W2PQY0 241 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 PRKAB2O43741 272 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 SLC25A27O95847 323 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 ZNF865P0CJ78 1059 aaPredicted RBP19.46■□□□□ 0.71
CUX2-202ENST00000397643 ZNF792Q3KQV3 632 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 RIOX2Q8IUF8 465 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 RHPN1Q8TCX5 695 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.46■□□□□ 0.71
CUX2-202ENST00000397643 MMP19Q99542 508 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 TINF2Q9BSI4 451 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 ARMT1Q9H993 441 aa19.46■□□□□ 0.71
CUX2-202ENST00000397643 ZNF214Q9UL59 606 aaPredicted RBP19.46■□□□□ 0.71
CUX2-202ENST00000397643 GOLIM4O00461 696 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 ADAMTS4O75173 837 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 SLFNL1Q499Z3 407 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 RNF180Q86T96 592 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 REPS2Q8NFH8 660 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 SH2D4AQ9H788 454 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 PRDM6Q9NQX0 595 aa19.45■□□□□ 0.7
CUX2-202ENST00000397643 DIS3Q9Y2L1 958 aaKnown RBP19.45■□□□□ 0.7
CUX2-202ENST00000397643 CYP2D7A0A087X1C5 515 aa19.44■□□□□ 0.7
CUX2-202ENST00000397643 PQBP1O60828 265 aaKnown RBP19.44■□□□□ 0.7
CUX2-202ENST00000397643 SAMD1Q6SPF0 538 aaPredicted RBP19.44■□□□□ 0.7
CUX2-202ENST00000397643 ANKRD33Q7Z3H0 272 aa19.44■□□□□ 0.7
CUX2-202ENST00000397643 USP38Q8NB14 1042 aa19.44■□□□□ 0.7
CUX2-202ENST00000397643 VWA5AO00534 786 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 EEF2P13639 858 aaKnown RBP19.43■□□□□ 0.7
CUX2-202ENST00000397643 RAG1P15918 1043 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 CDK8P49336 464 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 FPGSQ05932 587 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 FAAP100Q0VG06 881 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 GRIN2CQ14957 1233 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 C12orf60Q5U649 245 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 CCDC17Q96LX7 622 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 DNAJC2Q99543 621 aaKnown RBP19.43■□□□□ 0.7
CUX2-202ENST00000397643 PPP1R9AQ9ULJ8 1098 aa19.43■□□□□ 0.7
CUX2-202ENST00000397643 GREB1LQ9C091 1923 aaPredicted RBP19.43■□□□□ 0.7
CUX2-202ENST00000397643 MBD4O95243 580 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 CHGBP05060 677 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 AKR1A1P14550 325 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 ADD2P35612 726 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 KCTD2Q14681 263 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 C16orf86Q6ZW13 317 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 TOX2Q96NM4 488 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 ATP8A2Q9NTI2 1148 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 TMEM39AQ9NV64 488 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 SYNRGQ9UMZ2 1314 aa19.42■□□□□ 0.7
CUX2-202ENST00000397643 DNAJB2P25686 324 aa19.41■□□□□ 0.7
CUX2-202ENST00000397643 STAT3P40763 770 aa19.41■□□□□ 0.7
CUX2-202ENST00000397643 ACLYP53396 1101 aa19.41■□□□□ 0.7
CUX2-202ENST00000397643 CCSAPQ6IQ19 270 aaPredicted RBP19.41■□□□□ 0.7
CUX2-202ENST00000397643 KLHDC9Q8NEP7 349 aa19.41■□□□□ 0.7
CUX2-202ENST00000397643 TSEN34Q9BSV6 310 aaKnown RBP19.41■□□□□ 0.7
CUX2-202ENST00000397643 TBX21Q9UL17 535 aa19.41■□□□□ 0.7
CUX2-202ENST00000397643 USP17L12C9JPN9 530 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 USP17L21D6R901 530 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 HSP90AB4PQ58FF6 505 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 FAM83BQ5T0W9 1011 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.4■□□□□ 0.7
CUX2-202ENST00000397643 KANSL2Q9H9L4 492 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 CHD9Q3L8U1 2897 aa19.4■□□□□ 0.7
CUX2-202ENST00000397643 MYADML2A6NDP7 307 aa19.39■□□□□ 0.69
CUX2-202ENST00000397643 COPB2P35606 906 aa19.39■□□□□ 0.69
CUX2-202ENST00000397643 CLASRPQ8N2M8 674 aaKnown RBP19.39■□□□□ 0.69
CUX2-202ENST00000397643 SYMPKQ92797 1274 aaKnown RBP19.39■□□□□ 0.69
CUX2-202ENST00000397643 KIF1BPQ96EK5 621 aa19.39■□□□□ 0.69
CUX2-202ENST00000397643 STARD7Q9NQZ5 370 aa19.39■□□□□ 0.69
CUX2-202ENST00000397643 CNPY2Q9Y2B0 182 aa19.39■□□□□ 0.69
CUX2-202ENST00000397643 DNAJC25-GNG10A0A024R161 153 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.38■□□□□ 0.69
CUX2-202ENST00000397643 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.38■□□□□ 0.69
CUX2-202ENST00000397643 MOXD2PA6NHM9 499 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 SNAI1O95863 264 aaPredicted RBP19.38■□□□□ 0.69
CUX2-202ENST00000397643 IRX5P78411 483 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms