RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 STAT1P42224 750 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 IRX5P78411 483 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 RASA3Q14644 834 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 GEN1Q17RS7 908 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 LONRF2Q1L5Z9 754 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 RABGGTAQ92696 567 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TBC1D31Q96DN5 1066 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 CAPN7Q9Y6W3 813 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TEX14Q8IWB6 1497 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 KDM3AQ9Y4C1 1321 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 HGSO14964 777 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 GCNT3O95395 438 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 STX2P32856 288 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TDRD7Q8NHU6 1098 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 PPANQ9NQ55 473 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 ASXL2Q76L83 1435 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 CDC25BP30305 580 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 EIF4A1P60842 406 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 PTH1RQ03431 593 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 RASIP1Q5U651 963 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 SPATA1Q5VX52 437 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 GAS2L3Q86XJ1 694 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 GDAP1L1Q96MZ0 367 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 MRPL44Q9H9J2 332 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 NDUFB9Q9Y6M9 179 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 ARHGEF10O15013 1369 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 NCKAP5LQ9HCH0 1330 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 A0A1W2PQ27 194 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 A0A1W2PQ64 194 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 A0A1W2PQD8 194 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 DTNBO60941 627 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 UFL1O94874 794 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TROVE2P10155 538 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 LGR6Q9HBX8 967 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 AATFQ9NY61 560 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TBX22Q9Y458 520 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 KAT6BQ8WYB5 2073 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 PTPRTO14522 1441 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 CRCPO75575 148 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 TMED1Q13445 227 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 BIRC2Q13490 618 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 GOLGA5Q8TBA6 731 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 LSM14BQ9BX40 385 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 CAPS2Q9BXY5 557 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 USP44Q9H0E7 712 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 TBC1D7Q9P0N9 293 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 LARSQ9P2J5 1176 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 ZMYM6O95789 1325 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 A0A0D9SFI3 127 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 OPHN1O60890 802 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 SLC1A4P43007 532 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 TACO1Q9BSH4 297 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 GUCY2FP51841 1108 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 MYOCDQ8IZQ8 938 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 BCAP29Q9UHQ4 241 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 PCDHA7Q9UN72 937 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 ZKSCAN8Q15776 578 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 BCAS4Q8TDM0 211 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 FANCLQ9NW38 375 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 KLHL14Q9P2G3 628 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 USTQ9Y2C2 406 aa11.29□□□□□ -0.6
LIMCH1-203ENST00000396595 DNAJC8O75937 253 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 EIF6P56537 245 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 PKP1Q13835 747 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 NEURL1BA8MQ27 555 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 XRCC5P13010 732 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 PPARAQ07869 468 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 RASEFQ8IZ41 740 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 CNBD1Q8NA66 436 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 U2AF1L4Q8WU68 220 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 RAB3IPQ96QF0 476 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 IWS1Q96ST2 819 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 THEGQ9P2T0 379 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 KCNG1Q9UIX4 513 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 KRIT1O00522 736 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 KCNK3O14649 394 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 TFAP4Q01664 338 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 SNCBQ16143 134 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 ARPP21Q9UBL0 812 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 PARP3Q9Y6F1 533 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 DNMT1P26358 1616 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 DACT3Q96B18 629 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 VPS37BQ9H9H4 285 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 CDC23Q9UJX2 597 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 TACC3Q9Y6A5 838 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 CREB3O43889 395 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 A1BGP04217 495 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 PHLDB3Q6NSJ2 640 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 GPIHBP1Q8IV16 184 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 CDAN1Q8IWY9 1227 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 EPSTI1Q96J88 318 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 ATP8A2Q9NTI2 1148 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 MYO1AQ9UBC5 1043 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 GGA1Q9UJY5 639 aa11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 EPN1Q9Y6I3 576 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-203ENST00000396595 WDR62O43379 1518 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 GIPC1O14908 333 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 DAPK3O43293 454 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms