RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HAUS3Q68CZ6 603 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 CABP7Q86V35 215 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 TBC1D1Q86TI0 1168 aaPredicted RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 ANKRD13CQ8N6S4 541 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 SIRT1Q96EB6 747 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 WDR46O15213 610 aaKnown RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 SMTNP53814 917 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 NCBP1Q09161 790 aaKnown RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 TMTC3Q6ZXV5 915 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 RNF34Q969K3 372 aa13.01□□□□□ -0.33
SYNPO-202ENST00000394243 PPWD1Q96BP3 646 aaKnown RBP13.01□□□□□ -0.33
SYNPO-202ENST00000394243 NDUFA8P51970 172 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 ST13P4Q8IZP2 240 aaPredicted RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 PTPN22Q9Y2R2 807 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 ATF2P15336 505 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 EEF1GP26641 437 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 TDRD7Q8NHU6 1098 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 LRWD1Q9UFC0 647 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 AOX1Q06278 1338 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 MYSM1Q5VVJ2 828 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 MRPL44Q9H9J2 332 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 POLR3AO14802 1390 aaPredicted RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 EXOC3O60645 756 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 HEXIM1O94992 359 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 ARMC9Q7Z3E5 817 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 UIMC1Q96RL1 719 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 ABCB6Q9NP58 842 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 ADAM21Q9UKJ8 722 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 PCF11O94913 1555 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 NR1D1P20393 614 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 CASP14P31944 242 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 MRPL12P52815 198 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 RASSF7Q02833 373 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 PTPN21Q16825 1174 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 DRC3Q9H069 523 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 ATP8A1Q9Y2Q0 1164 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 BACH1O14867 736 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 EEF1DP29692 281 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 IL1RL1Q01638 556 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 RNASELQ05823 741 aaKnown RBP13□□□□□ -0.33
SYNPO-202ENST00000394243 JADE1Q6IE81 842 aa13□□□□□ -0.33
SYNPO-202ENST00000394243 MYCT1Q8N699 235 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 GPCPD1Q9NPB8 672 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 IRAK4Q9NWZ3 460 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 ANGPTL2Q9UKU9 493 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 SLC4A7Q9Y6M7 1214 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.99□□□□□ -0.33
SYNPO-202ENST00000394243 KIF1CO43896 1103 aaKnown RBP12.99□□□□□ -0.33
SYNPO-202ENST00000394243 CUL4BQ13620 913 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 NCAPH2Q6IBW4 605 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 TTC6Q86TZ1 520 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 TIMM10P62072 90 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 SCYL1Q96KG9 808 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 EPS15L1Q9UBC2 864 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 TTC4O95801 387 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 GNA14O95837 355 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 PDHA1P08559 390 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 ZC3H18Q86VM9 953 aaKnown RBP12.99□□□□□ -0.33
SYNPO-202ENST00000394243 CCDC138Q96M89 665 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 TTLL3Q9Y4R7 772 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 PASKQ96RG2 1323 aa12.99□□□□□ -0.33
SYNPO-202ENST00000394243 ACTN3Q08043 901 aaPredicted RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 SPATA1Q5VX52 437 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 GRAMD4Q6IC98 578 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 TEKT1Q969V4 418 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 hCG_1642624A0A1W2PR95 340 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 CALCRLQ16602 461 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 ARMC2Q8NEN0 867 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 RUNDC3BQ96NL0 473 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 PCDHB13Q9Y5F0 798 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 ZBBXA8MT70 800 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 CXCR5P32302 372 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 ZNF449Q6P9G9 518 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 GDAP1Q8TB36 358 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 NOVA2Q9UNW9 492 aaKnown RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 EEF1B2P24534 225 aaKnown RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 CA8P35219 290 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 POLR2FP61218 127 aaKnown RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 GNPTABQ3T906 1256 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 KRT80Q6KB66 452 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 RDH13Q8NBN7 331 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 EIF2AQ9BY44 585 aaKnown RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 CNOT10Q9H9A5 744 aaKnown RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 SPTLC3Q9NUV7 552 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 PCDHA7Q9UN72 937 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 ARHGEF35A5YM69 484 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 H7C1D1 291 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 G2E3Q7L622 706 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 TAB3Q8N5C8 712 aaPredicted RBP12.98□□□□□ -0.33
SYNPO-202ENST00000394243 DYDC2Q96IM9 177 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 ARMT1Q9H993 441 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 RAB20Q9NX57 234 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 VPS54Q9P1Q0 977 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 DNM3Q9UQ16 869 aa12.98□□□□□ -0.33
SYNPO-202ENST00000394243 GPAA1O43292 621 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 ATF7P17544 494 aaPredicted RBP12.97□□□□□ -0.33
SYNPO-202ENST00000394243 RBL2Q08999 1139 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 ALS2CLQ60I27 953 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 CCHCR1Q8TD31 782 aa12.97□□□□□ -0.33
SYNPO-202ENST00000394243 CYTH2Q99418 400 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms