RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ELOA2Q8IYF1 753 aaPredicted RBP28.84■■■□□ 2.21
SHOX2-201ENST00000389589 CCDC12Q8WUD4 166 aaPredicted RBP28.84■■■□□ 2.21
SHOX2-201ENST00000389589 RRP36Q96EU6 259 aaKnown RBP28.84■■■□□ 2.21
SHOX2-201ENST00000389589 PDHBP11177 359 aa28.84■■■□□ 2.21
SHOX2-201ENST00000389589 FERMT2Q96AC1 680 aa28.84■■■□□ 2.21
SHOX2-201ENST00000389589 CFAP100Q494V2 611 aa28.83■■■□□ 2.21
SHOX2-201ENST00000389589 HEATR3Q7Z4Q2 680 aa28.83■■■□□ 2.21
SHOX2-201ENST00000389589 LARGE2Q8N3Y3 721 aa28.83■■■□□ 2.21
SHOX2-201ENST00000389589 NAT10Q9H0A0 1025 aaKnown RBP28.83■■■□□ 2.21
SHOX2-201ENST00000389589 COL2A1P02458 1487 aaPredicted RBP28.83■■■□□ 2.2
SHOX2-201ENST00000389589 USP17L5A8MUK1 530 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 STXBP3O00186 592 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 ENTPD3O75355 529 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 SNHG28P0DPA3 235 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 CACNB3P54284 484 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 TCP10Q12799 353 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 RSBN1LQ6PCB5 846 aaPredicted RBP28.82■■■□□ 2.2
SHOX2-201ENST00000389589 PIK3AP1Q6ZUJ8 805 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 FOXP4Q8IVH2 680 aaPredicted RBP28.82■■■□□ 2.2
SHOX2-201ENST00000389589 CLIP2Q9UDT6 1046 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 SEC63Q9UGP8 760 aaKnown RBP28.82■■■□□ 2.2
SHOX2-201ENST00000389589 TGFB2P61812 414 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 CEP57L1Q8IYX8 460 aa28.82■■■□□ 2.2
SHOX2-201ENST00000389589 TRIM34Q9BYJ4 488 aa28.81■■■□□ 2.2
SHOX2-201ENST00000389589 RIOX1Q9H6W3 641 aa28.81■■■□□ 2.2
SHOX2-201ENST00000389589 DDTLA6NHG4 134 aaPredicted RBP28.81■■■□□ 2.2
SHOX2-201ENST00000389589 KRBA2Q6ZNG9 492 aa28.81■■■□□ 2.2
SHOX2-201ENST00000389589 ZSCAN29Q8IWY8 852 aaPredicted RBP28.81■■■□□ 2.2
SHOX2-201ENST00000389589 HOOK1Q9UJC3 728 aaKnown RBP28.81■■■□□ 2.2
SHOX2-201ENST00000389589 hCG_1984214I3L0E3 225 aa28.8■■■□□ 2.2
SHOX2-201ENST00000389589 MPHOSPH10O00566 681 aaKnown RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 VIL1P09327 827 aaKnown RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 NOM1Q5C9Z4 860 aaKnown RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 TYW1BQ6NUM6 668 aa28.8■■■□□ 2.2
SHOX2-201ENST00000389589 C11orf57Q6ZUT1 292 aaPredicted RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 RASGRP2Q7LDG7 609 aa28.8■■■□□ 2.2
SHOX2-201ENST00000389589 ZSCAN30Q86W11 494 aa28.8■■■□□ 2.2
SHOX2-201ENST00000389589 LRRC47Q8N1G4 583 aaKnown RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 ZNF713Q8N859 430 aaPredicted RBP28.8■■■□□ 2.2
SHOX2-201ENST00000389589 ATRNL1Q5VV63 1379 aa28.8■■■□□ 2.2
SHOX2-201ENST00000389589 M0R2N6 131 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 ATP2C1P98194 919 aaPredicted RBP28.79■■■□□ 2.2
SHOX2-201ENST00000389589 PLCB2Q00722 1185 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 GRIN1Q05586 938 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 IQCB1Q15051 598 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 ZNF174Q15697 407 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 CNNM3Q8NE01 707 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 TDRD3Q9H7E2 651 aaKnown RBP28.79■■■□□ 2.2
SHOX2-201ENST00000389589 DNAJC18Q9H819 358 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 PIM2Q9P1W9 311 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 SH3BP5LQ7L8J4 393 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 ERCC4Q92889 916 aaPredicted RBP28.79■■■□□ 2.2
SHOX2-201ENST00000389589 ZMYND12Q9H0C1 365 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 CSRNP2Q9H175 543 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 ZNF277Q9NRM2 450 aaPredicted RBP28.79■■■□□ 2.2
SHOX2-201ENST00000389589 HDAC9Q9UKV0 1011 aa28.79■■■□□ 2.2
SHOX2-201ENST00000389589 GOLGA6L19H0YKK7 550 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 PTMAP06454 111 aaKnown RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 CCDC194A0A1B0GVG4 234 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 EIF6P56537 245 aaKnown RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 NLRP12P59046 1061 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 LONRF3Q496Y0 759 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 CERKLQ49MI3 558 aaPredicted RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 TATDN1Q6P1N9 297 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 METTL16Q86W50 562 aaKnown RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 PRMT6Q96LA8 375 aaPredicted RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 RRAGDQ9NQL2 400 aaPredicted RBP28.78■■■□□ 2.2
SHOX2-201ENST00000389589 TUBE1Q9UJT0 475 aa28.78■■■□□ 2.2
SHOX2-201ENST00000389589 POLD1P28340 1107 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 NAPAP54920 295 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 SPECC1Q5M775 1068 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 CPVLQ9H3G5 476 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 TMOD2Q9NZR1 351 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 PCDHA6Q9UN73 950 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 PCDHA8Q9Y5H6 950 aa28.77■■■□□ 2.2
SHOX2-201ENST00000389589 PSMD14O00487 310 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 AP5Z1O43299 807 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 GNA11P29992 359 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 PTGDRQ13258 359 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 GMLQ99445 158 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 BPIFA3Q9BQP9 254 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 C6orf50Q9HD87 102 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 WNT7AO00755 349 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 ZNF543Q08ER8 600 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 GPATCH4Q5T3I0 446 aaKnown RBP28.76■■■□□ 2.19
SHOX2-201ENST00000389589 KANK3Q6NY19 840 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 HOMER1Q86YM7 354 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 PIGSQ96S52 555 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 KANSL2Q9H9L4 492 aa28.76■■■□□ 2.19
SHOX2-201ENST00000389589 BRCA1P38398 1863 aaKnown RBP28.76■■■□□ 2.19
SHOX2-201ENST00000389589 FRMPD2Q68DX3 1309 aaPredicted RBP28.75■■■□□ 2.19
SHOX2-201ENST00000389589 COL4A5P29400 1685 aa28.75■■■□□ 2.19
SHOX2-201ENST00000389589 ADAMTS3O15072 1205 aa28.75■■■□□ 2.19
SHOX2-201ENST00000389589 RAD17O75943 681 aa28.75■■■□□ 2.19
SHOX2-201ENST00000389589 CLEC10AQ8IUN9 316 aa28.75■■■□□ 2.19
SHOX2-201ENST00000389589 ZNRF3Q9ULT6 936 aa28.75■■■□□ 2.19
SHOX2-201ENST00000389589 BECN2A8MW95 431 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 NIM1KQ8IY84 436 aa28.74■■■□□ 2.19
SHOX2-201ENST00000389589 OGFOD1Q8N543 542 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms