RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SPATA1Q5VX52 437 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 PPFIBP1Q86W92 1011 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 DCP1AQ9NPI6 582 aaPredicted RBP18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 ZNF569Q5MCW4 686 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 TAF3Q5VWG9 929 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 SUGCTQ9HAC7 445 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 CEP131Q9UPN4 1083 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 PLCH1Q4KWH8 1693 aa18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 AHDC1Q5TGY3 1603 aaPredicted RBP18.42■□□□□ 0.54
NKX3-1-201ENST00000380871 PPP1R3GB7ZBB8 358 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 TPM1P09493 284 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 CNBD1Q8NA66 436 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 SLC44A5Q8NCS7 719 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 RABGGTAQ92696 567 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 PANX2Q96RD6 677 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 H3BQF6 201 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 MFAP3LO75121 409 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 PBX1P40424 430 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 CHMP4BP1P59074 171 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 MAPK8IP1Q9UQF2 711 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 RTL9Q8NET4 1388 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 LONRF2Q1L5Z9 754 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 CDKAL1Q5VV42 579 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 WWC2Q6AWC2 1192 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 KANK3Q6NY19 840 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 PNKPQ96T60 521 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 MYH6P13533 1939 aa18.41■□□□□ 0.54
NKX3-1-201ENST00000380871 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 TXLNAP40222 546 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 PHF20Q9BVI0 1012 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 ANKRD2Q9GZV1 360 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 ANKZF1Q9H8Y5 726 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 DOCK2Q92608 1830 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 CNTNAP4Q9C0A0 1308 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 KRT2P35908 639 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 FUT2Q10981 343 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 SLC10A5Q5PT55 438 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 SH3RF1Q7Z6J0 888 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 CTCFLQ8NI51 663 aaPredicted RBP18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 TGFBRAP1Q8WUH2 860 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 MAPKAPK5Q8IW41 473 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 VPS16Q9H269 839 aa18.4■□□□□ 0.54
NKX3-1-201ENST00000380871 XDHP47989 1333 aa18.39■□□□□ 0.54
NKX3-1-201ENST00000380871 LDHBP07195 334 aaKnown RBP18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 RPGRQ92834 1020 aaKnown RBP18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 RNF26Q9BY78 433 aaPredicted RBP18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 MKNK2Q9HBH9 465 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 MYH2Q9UKX2 1941 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 ERVK-24P63145 666 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 TFAP4Q01664 338 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 NPY5RQ15761 445 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 SLC35F6Q8N357 371 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 MTRQ99707 1265 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 CPVLQ9H3G5 476 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 LRP5O75197 1615 aa18.39■□□□□ 0.53
NKX3-1-201ENST00000380871 XBP1P17861 261 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 PTGDRQ13258 359 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 SH3RF3Q8TEJ3 882 aaPredicted RBP18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 LRRC4BQ9NT99 713 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 STX8Q9UNK0 236 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 BCL9LQ86UU0 1499 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 MYH8P13535 1937 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 F8W031 263 aaPredicted RBP18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 KIF5CO60282 957 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 NLRP5P59047 1200 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 MCM6Q14566 821 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 KRT31Q15323 416 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 SRGAP1Q7Z6B7 1085 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 USP17L3A6NCW0 530 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 USP17L4A6NCW7 530 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 RHOXF2BP0C7M4 288 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 TM4SF1P30408 202 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 IRX5P78411 483 aaPredicted RBP18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 KIF4BQ2VIQ3 1234 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 USP17L1Q7RTZ2 530 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 GPKOWQ92917 476 aaPredicted RBP eCLIP18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 RHOXF2Q9BQY4 288 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 TAB2Q9NYJ8 693 aa18.38■□□□□ 0.53
NKX3-1-201ENST00000380871 UFL1O94874 794 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 SRBD1Q8N5C6 995 aaKnown RBP18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 RASGRP4Q8TDF6 673 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 BRIP1Q9BX63 1249 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 BCORQ6W2J9 1755 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 C6orf229H3BNL8 230 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 RIMBP2O15034 1052 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 IL17AQ16552 155 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 RASGRP2Q7LDG7 609 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 TRIM10Q9UDY6 481 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 TFR2Q9UP52 801 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 ARAP2Q8WZ64 1704 aa18.37■□□□□ 0.53
NKX3-1-201ENST00000380871 BAZ2AQ9UIF9 1905 aaKnown RBP18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 TTC38Q5R3I4 469 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 CALCOCO1Q9P1Z2 691 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 CDC23Q9UJX2 597 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 N4BP1O75113 896 aaKnown RBP18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 GOLGA8HP0CJ92 632 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 MCM7P33993 719 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 RRAGBQ5VZM2 374 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 PIK3AP1Q6ZUJ8 805 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 N4BP3O15049 544 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 500.5 ms