RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MTRQ99707 1265 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 ERFEQ4G0M1 354 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 ANKZF1Q9H8Y5 726 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 ABHD10Q9NUJ1 306 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 CTAGE15A4D2H0 777 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 CTAGE8P0CG41 777 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 TNNT3P45378 269 aaPredicted RBP13.69□□□□□ -0.22
CLIP3-201ENST00000360535 CDKAL1Q5VV42 579 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 TMTC3Q6ZXV5 915 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 CTAGE6Q86UF2 777 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 CTAGE4Q8IX94 777 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 NOA1Q8NC60 698 aaKnown RBP13.69□□□□□ -0.22
CLIP3-201ENST00000360535 NAPGQ99747 312 aaPredicted RBP13.69□□□□□ -0.22
CLIP3-201ENST00000360535 MCM9Q9NXL9 1143 aa13.69□□□□□ -0.22
CLIP3-201ENST00000360535 MYH3P11055 1940 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 RPN1P04843 607 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 SCG2P13521 617 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 PRDX5P30044 214 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 EIF5P55010 431 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 VSNL1P62760 191 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 FUT2Q10981 343 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 TSR1Q2NL82 804 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 CEP112Q8N8E3 955 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 TRIM47Q96LD4 638 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 RIOK1Q9BRS2 568 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 ADAM21Q9UKJ8 722 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 STRCP1A6NGW2 1772 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 FAM193AP78312 1265 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 INTS5Q6P9B9 1019 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 NUP98P52948 1817 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 USP17L8P0C7I0 530 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 GOLGA8HP0CJ92 632 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 TCP11X2Q5H9J9 407 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 RASGRP2Q7LDG7 609 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 SH3RF1Q7Z6J0 888 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 STAG2Q8N3U4 1231 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 CELF1Q92879 486 aaKnown RBP13.68□□□□□ -0.22
CLIP3-201ENST00000360535 DYNLL2Q96FJ2 89 aa13.68□□□□□ -0.22
CLIP3-201ENST00000360535 PMS1P54277 932 aaKnown RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 HEATR3Q7Z4Q2 680 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 ELOA2Q8IYF1 753 aaPredicted RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 PLCD3Q8N3E9 789 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 DRC1Q96MC2 740 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 VAT1LQ9HCJ6 419 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 TTC26A0AVF1 554 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 IRX5P78411 483 aaPredicted RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 MRPS25P82663 173 aaKnown RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 ATP2C1P98194 919 aaPredicted RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 ITPK1Q13572 414 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 NPY5RQ15761 445 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 INF2Q27J81 1249 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 CYP26C1Q6V0L0 522 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 KIAA1328Q86T90 577 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 TMTC1Q8IUR5 882 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 ZNF384Q8TF68 577 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 NAA15Q9BXJ9 866 aaKnown RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 RBM28Q9NW13 759 aaKnown RBP13.67□□□□□ -0.22
CLIP3-201ENST00000360535 STX8Q9UNK0 236 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 TOGARAM1Q9Y4F4 1720 aa13.67□□□□□ -0.22
CLIP3-201ENST00000360535 CNTNAP5Q8WYK1 1306 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 LOC102724428A0A0B4J2F2 783 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CCDC194A0A1B0GVG4 234 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CCDC151A5D8V7 595 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 PARP1P09874 1014 aaKnown RBP13.66□□□□□ -0.22
CLIP3-201ENST00000360535 UBA7P41226 1012 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 SIK1P57059 783 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 MECOMQ03112 1051 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 FAN1Q9Y2M0 1017 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 TAF1P21675 1872 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 FAM205AQ6ZU69 1335 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CAMTA2O94983 1202 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 PBX1P40424 430 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 KLK7P49862 253 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 TFAP4Q01664 338 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 ZSCAN26Q16670 478 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 FKBP15Q5T1M5 1219 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 FAM84BQ96KN1 310 aaPredicted RBP13.66□□□□□ -0.22
CLIP3-201ENST00000360535 KAT14Q9H8E8 782 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 TTF2Q9UNY4 1162 aaKnown RBP13.66□□□□□ -0.22
CLIP3-201ENST00000360535 EPN1Q9Y6I3 576 aaPredicted RBP13.66□□□□□ -0.22
CLIP3-201ENST00000360535 BCL9O00512 1426 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 ERLIN1O75477 346 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 NTSR2O95665 410 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CCDC178Q5BJE1 867 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CCDC122Q5T0U0 273 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 SLC51AQ86UW1 340 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 CAGE1Q8TC20 777 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 AK7Q96M32 723 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 PLEKHA4Q9H4M7 779 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 MYO6Q9UM54 1294 aa13.66□□□□□ -0.22
CLIP3-201ENST00000360535 MACROD2A1Z1Q3 448 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 USP17L3A6NCW0 530 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 USP17L4A6NCW7 530 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 B4DLN1 442 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 GTPBP6O43824 516 aaPredicted RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 BMP15O95972 392 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 CYP27A1Q02318 531 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 USP17L1Q7RTZ2 530 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 HDXQ7Z353 690 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 HPS3Q969F9 1004 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms