RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 PLXNA1Q9UIW2 1896 aa20■□□□□ 0.79
CLN3-203ENST00000357806 B4E1Z4 1266 aa20■□□□□ 0.79
CLN3-203ENST00000357806 PEX10O60683 326 aa20■□□□□ 0.79
CLN3-203ENST00000357806 KDM4AO75164 1064 aa20■□□□□ 0.79
CLN3-203ENST00000357806 CYP21A2P08686 494 aa20■□□□□ 0.79
CLN3-203ENST00000357806 CCNA1P78396 465 aa20■□□□□ 0.79
CLN3-203ENST00000357806 SLFN13Q68D06 897 aa20■□□□□ 0.79
CLN3-203ENST00000357806 POTEEQ6S8J3 1075 aa20■□□□□ 0.79
CLN3-203ENST00000357806 IQCA1Q86XH1 822 aa20■□□□□ 0.79
CLN3-203ENST00000357806 CCAR1Q8IX12 1150 aaKnown RBP20■□□□□ 0.79
CLN3-203ENST00000357806 NUP88Q99567 741 aaPredicted RBP20■□□□□ 0.79
CLN3-203ENST00000357806 RBM8AQ9Y5S9 174 aaKnown RBP20■□□□□ 0.79
CLN3-203ENST00000357806 PTCH2Q9Y6C5 1203 aa20■□□□□ 0.79
CLN3-203ENST00000357806 CNMDO75829 334 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 MAPK4P31152 587 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 PRKCZQ05513 592 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 SAMD1Q6SPF0 538 aaPredicted RBP19.99■□□□□ 0.79
CLN3-203ENST00000357806 ATG4CQ96DT6 458 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 LSG1Q9H089 658 aaKnown RBP19.99■□□□□ 0.79
CLN3-203ENST00000357806 ANO2Q9NQ90 1003 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 FBXO28Q9NVF7 368 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 BTBD7Q9P203 1132 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 PPP1R9AQ9ULJ8 1098 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 TOP1P11387 765 aaKnown RBP19.99■□□□□ 0.79
CLN3-203ENST00000357806 TRDNQ13061 729 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 Q3C1V9 767 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 CCDC178Q5BJE1 867 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 RAET1EQ8TD07 263 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 GMCL1Q96IK5 515 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 TTC14Q96N46 770 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 SLF1Q9BQI6 1058 aa19.99■□□□□ 0.79
CLN3-203ENST00000357806 BMP3P12645 472 aa19.98■□□□□ 0.79
CLN3-203ENST00000357806 SLC9C1Q4G0N8 1177 aa19.98■□□□□ 0.79
CLN3-203ENST00000357806 NKX2-3Q8TAU0 364 aa19.98■□□□□ 0.79
CLN3-203ENST00000357806 ZKSCAN3Q9BRR0 538 aa19.98■□□□□ 0.79
CLN3-203ENST00000357806 PORCNQ9H237 461 aa19.98■□□□□ 0.79
CLN3-203ENST00000357806 CWC22Q9HCG8 908 aaKnown RBP19.98■□□□□ 0.79
CLN3-203ENST00000357806 CCDC85CA6NKD9 419 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 SLC1A4P43007 532 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 TMEM47Q9BQJ4 181 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 ZSWIM5Q9P217 1185 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 FEM1BQ9UK73 627 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 ISY1Q9ULR0 285 aaKnown RBP19.97■□□□□ 0.79
CLN3-203ENST00000357806 GABRQQ9UN88 632 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 ADAMTS5Q9UNA0 930 aa19.97■□□□□ 0.79
CLN3-203ENST00000357806 CAPN15O75808 1086 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 FLT3LGP49771 235 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 STAT2P52630 851 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 RCSD1Q6JBY9 416 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 RALYLQ86SE5 291 aaKnown RBP19.96■□□□□ 0.79
CLN3-203ENST00000357806 DGKHQ86XP1 1220 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 PRPF38AQ8NAV1 312 aaKnown RBP19.96■□□□□ 0.79
CLN3-203ENST00000357806 SOCS4Q8WXH5 440 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 UBAC1Q9BSL1 405 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 SPATC1LQ9H0A9 340 aa19.96■□□□□ 0.79
CLN3-203ENST00000357806 E7EWF7 191 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 VWA5AO00534 786 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 MCCP23508 829 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 IRF5Q13568 498 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 PLS1Q14651 629 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 GPR142Q7Z601 462 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 NBPF11Q86T75 865 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 NCOA7Q8NI08 942 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 DCAF4Q8WV16 495 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 ZSCAN10Q96SZ4 725 aaPredicted RBP19.95■□□□□ 0.78
CLN3-203ENST00000357806 MTMR7Q9Y216 660 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 TNKSO95271 1327 aa19.95■□□□□ 0.78
CLN3-203ENST00000357806 WDR78Q5VTH9 848 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 PLEKHH3Q7Z736 793 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 FAM160B2Q86V87 743 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 SLAIN1Q8ND83 568 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 KIFC2Q96AC6 838 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 ARMC5Q96C12 935 aa19.94■□□□□ 0.78
CLN3-203ENST00000357806 TMEM232C9JQI7 657 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 GRK4P32298 578 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 IKQ13123 557 aaPredicted RBP19.93■□□□□ 0.78
CLN3-203ENST00000357806 TMEM132BQ14DG7 1078 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 CCDC96Q2M329 555 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 KCTD1Q719H9 257 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 ENAHQ8N8S7 591 aaPredicted RBP19.93■□□□□ 0.78
CLN3-203ENST00000357806 SHCBP1Q8NEM2 672 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 CHURC1Q8WUH1 139 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 NUDT12Q9BQG2 462 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 MOV10L1Q9BXT6 1211 aaKnown RBP19.93■□□□□ 0.78
CLN3-203ENST00000357806 TAF6LQ9Y6J9 622 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 IVNS1ABPQ9Y6Y0 642 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 BRCA2P51587 3418 aa19.93■□□□□ 0.78
CLN3-203ENST00000357806 NECTIN1Q15223 517 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 RNF20Q5VTR2 975 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 STOX1Q6ZVD7 989 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 RASGRP2Q7LDG7 609 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 SH3TC2Q8TF17 1288 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 CHMP4CQ96CF2 233 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 KAT14Q9H8E8 782 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 GJD2Q9UKL4 321 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 ZNF214Q9UL59 606 aaPredicted RBP19.92■□□□□ 0.78
CLN3-203ENST00000357806 CTDP1Q9Y5B0 961 aaPredicted RBP19.92■□□□□ 0.78
CLN3-203ENST00000357806 SLC27A2O14975 620 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 ADCY3O60266 1144 aa19.92■□□□□ 0.78
CLN3-203ENST00000357806 PLA2G6O60733 806 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms