RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 Q6ZUG5 572 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 GMCL1Q96IK5 515 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 KIF2CQ99661 725 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 R3HDMLQ9H3Y0 253 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 TBC1D8O95759 1140 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 PDHBP11177 359 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 BMP3P12645 472 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 LIFRP42702 1097 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 CRHR2Q13324 411 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 KCTD1Q719H9 257 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 P2RX7Q99572 595 aaKnown RBP25.96■■□□□ 1.75
SHMT1-203ENST00000354098 FBXO28Q9NVF7 368 aa25.96■■□□□ 1.75
SHMT1-203ENST00000354098 OSBPP22059 807 aa25.95■■□□□ 1.74
SHMT1-203ENST00000354098 IRX3P78415 501 aaPredicted RBP25.95■■□□□ 1.74
SHMT1-203ENST00000354098 CA12O43570 354 aa25.94■■□□□ 1.74
SHMT1-203ENST00000354098 SNHG28P0DPA3 235 aa25.94■■□□□ 1.74
SHMT1-203ENST00000354098 NFXL1Q6ZNB6 911 aa25.94■■□□□ 1.74
SHMT1-203ENST00000354098 TMTC2Q8N394 836 aa25.94■■□□□ 1.74
SHMT1-203ENST00000354098 MYL10Q9BUA6 226 aa25.94■■□□□ 1.74
SHMT1-203ENST00000354098 ISY1Q9ULR0 285 aaKnown RBP25.94■■□□□ 1.74
SHMT1-203ENST00000354098 FRMPD2Q68DX3 1309 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-203ENST00000354098 FLOT1O75955 427 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 FGD1P98174 961 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 SAMD1Q6SPF0 538 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-203ENST00000354098 DCAF4Q8WV16 495 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 TBC1D32Q96NH3 1257 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 PARK7Q99497 189 aaKnown RBP25.93■■□□□ 1.74
SHMT1-203ENST00000354098 BEGAINQ9BUH8 593 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 TSKSQ9UJT2 592 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 PNMA3Q9UL41 463 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 CCDC69A6NI79 296 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 TMEM232C9JQI7 657 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 GOLGA8HP0CJ92 632 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 TROAPQ12815 778 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 CCDC96Q2M329 555 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 POTEEQ6S8J3 1075 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 SGMS1Q86VZ5 419 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 ZNF654Q8IZM8 581 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 BRF1Q92994 677 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 ZFYVE28Q9HCC9 887 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 PDRG1Q9NUG6 133 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 BRPF3Q9ULD4 1205 aa25.93■■□□□ 1.74
SHMT1-203ENST00000354098 COG2Q14746 738 aa25.92■■□□□ 1.74
SHMT1-203ENST00000354098 TTBK2Q6IQ55 1244 aa25.92■■□□□ 1.74
SHMT1-203ENST00000354098 CATIPQ7Z7H3 387 aa25.92■■□□□ 1.74
SHMT1-203ENST00000354098 RAB11FIP4Q86YS3 637 aa25.92■■□□□ 1.74
SHMT1-203ENST00000354098 GPCPD1Q9NPB8 672 aa25.92■■□□□ 1.74
SHMT1-203ENST00000354098 PEX10O60683 326 aa25.91■■□□□ 1.74
SHMT1-203ENST00000354098 HERVK_113P62684 666 aa25.91■■□□□ 1.74
SHMT1-203ENST00000354098 ZNF543Q08ER8 600 aa25.91■■□□□ 1.74
SHMT1-203ENST00000354098 TOB2Q14106 344 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-203ENST00000354098 SMCR8Q8TEV9 937 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-203ENST00000354098 AGXT2Q9BYV1 514 aa25.91■■□□□ 1.74
SHMT1-203ENST00000354098 SAGE1Q9NXZ1 904 aa25.91■■□□□ 1.74
SHMT1-203ENST00000354098 SPDYE16A6NNV3 312 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-203ENST00000354098 APOBRQ0VD83 1088 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 FBXL16Q8N461 479 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 NUP133Q8WUM0 1156 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 LARP6Q9BRS8 491 aaKnown RBP25.9■■□□□ 1.74
SHMT1-203ENST00000354098 CFHR5Q9BXR6 569 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 SLC12A7Q9Y666 1083 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 ADGRA2Q96PE1 1338 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 TLR2O60603 784 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 RXRAP19793 462 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 DSG3P32926 999 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 STAG2Q8N3U4 1231 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 CPA4Q9UI42 421 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 FEM1BQ9UK73 627 aa25.9■■□□□ 1.74
SHMT1-203ENST00000354098 RLFQ13129 1914 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 SLC16A2P36021 539 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 NEK4P51957 841 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 ATG4CQ96DT6 458 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 SLF1Q9BQI6 1058 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 CPVLQ9H3G5 476 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 HOXC10Q9NYD6 342 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 PPP1R9AQ9ULJ8 1098 aa25.89■■□□□ 1.73
SHMT1-203ENST00000354098 KLF18A0A0U1RQI7 1052 aa25.88■■□□□ 1.73
SHMT1-203ENST00000354098 PARP1P09874 1014 aaKnown RBP25.88■■□□□ 1.73
SHMT1-203ENST00000354098 STAT2P52630 851 aa25.88■■□□□ 1.73
SHMT1-203ENST00000354098 APOA5Q6Q788 366 aa25.88■■□□□ 1.73
SHMT1-203ENST00000354098 KIFC2Q96AC6 838 aa25.88■■□□□ 1.73
SHMT1-203ENST00000354098 MAD2L2Q9UI95 211 aa25.88■■□□□ 1.73
SHMT1-203ENST00000354098 DDAH1O94760 285 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 HSPA1AP0DMV8 641 aaKnown RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 HSPA1BP0DMV9 641 aaKnown RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 IKQ13123 557 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 GRM4Q14833 912 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 CCDC144CPQ8IYA2 1237 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 TXNRD2Q9NNW7 524 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 RBPJLQ9UBG7 517 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 ASPRV1Q53RT3 343 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 GPATCH4Q5T3I0 446 aaKnown RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 C17orf99Q6UX52 265 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 MICU3Q86XE3 530 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 ANKRD13CQ8N6S4 541 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 PRPF38AQ8NAV1 312 aaKnown RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 UBA5Q9GZZ9 404 aa25.87■■□□□ 1.73
SHMT1-203ENST00000354098 NAP1L2Q9ULW6 460 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-203ENST00000354098 PARP14Q460N5 1801 aa25.86■■□□□ 1.73
SHMT1-203ENST00000354098 PALM3A6NDB9 673 aaPredicted RBP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms